View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19704_low_1 (Length: 1010)

Name: NF19704_low_1
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19704_low_1
NF19704_low_1
[»] chr6 (34 HSPs)
chr6 (15-803)||(31289608-31290370)
chr6 (51-397)||(26651948-26652300)
chr6 (51-397)||(26757916-26758268)
chr6 (801-985)||(31290408-31290598)
chr6 (100-445)||(27421059-27421403)
chr6 (272-422)||(26632715-26632865)
chr6 (272-422)||(26738691-26738841)
chr6 (484-581)||(27420964-27421061)
chr6 (333-549)||(31394770-31394987)
chr6 (749-797)||(26952498-26952546)
chr6 (749-797)||(26961991-26962039)
chr6 (749-797)||(26980289-26980337)
chr6 (910-975)||(2820373-2820438)
chr6 (749-786)||(26649356-26649393)
chr6 (749-786)||(26755324-26755361)
chr6 (801-846)||(27608250-27608295)
chr6 (801-846)||(27715637-27715682)
chr6 (891-963)||(5970098-5970170)
chr6 (891-963)||(15443692-15443764)
chr6 (801-848)||(26058891-26058938)
chr6 (801-848)||(26078861-26078908)
chr6 (890-961)||(32313403-32313474)
chr6 (890-948)||(8931591-8931649)
chr6 (891-949)||(9195744-9195802)
chr6 (891-949)||(9617445-9617503)
chr6 (891-949)||(16766708-16766766)
chr6 (903-952)||(10335378-10335427)
chr6 (891-960)||(25038061-25038130)
chr6 (891-948)||(26562701-26562758)
chr6 (95-172)||(26632634-26632711)
chr6 (95-172)||(26738610-26738687)
chr6 (802-835)||(26876539-26876572)
chr6 (907-952)||(29449689-29449734)
chr6 (909-962)||(34625732-34625785)
[»] scaffold0003 (2 HSPs)
scaffold0003 (100-445)||(65960-66304)
scaffold0003 (484-581)||(66302-66399)
[»] chr1 (12 HSPs)
chr1 (842-973)||(264591-264724)
chr1 (891-949)||(44482241-44482299)
chr1 (903-963)||(14332406-14332465)
chr1 (913-957)||(23605132-23605176)
chr1 (918-961)||(17080898-17080941)
chr1 (891-961)||(5376490-5376560)
chr1 (897-959)||(6427351-6427413)
chr1 (630-660)||(18008612-18008642)
chr1 (891-949)||(25361897-25361955)
chr1 (895-949)||(34712377-34712431)
chr1 (908-954)||(43609825-43609871)
chr1 (918-963)||(21057780-21057825)
[»] scaffold0022 (1 HSPs)
scaffold0022 (897-964)||(99889-99956)
[»] chr5 (11 HSPs)
chr5 (891-949)||(22423802-22423860)
chr5 (896-954)||(4991372-4991429)
chr5 (895-964)||(38749557-38749626)
chr5 (897-940)||(16374338-16374381)
chr5 (891-961)||(3966502-3966572)
chr5 (891-961)||(18592072-18592142)
chr5 (891-949)||(21522761-21522819)
chr5 (891-949)||(21533327-21533385)
chr5 (897-959)||(43208270-43208332)
chr5 (898-959)||(36838544-36838605)
chr5 (895-948)||(41558648-41558701)
[»] chr3 (7 HSPs)
chr3 (847-952)||(45382751-45382858)
chr3 (890-961)||(16192739-16192810)
chr3 (891-959)||(8039825-8039893)
chr3 (913-964)||(19323460-19323511)
chr3 (905-960)||(28576716-28576771)
chr3 (901-963)||(35990525-35990587)
chr3 (895-960)||(3185242-3185306)
[»] chr7 (9 HSPs)
chr7 (891-949)||(6028636-6028694)
chr7 (896-949)||(7328686-7328739)
chr7 (888-949)||(7438717-7438778)
chr7 (895-958)||(31808503-31808566)
chr7 (905-952)||(43160492-43160539)
chr7 (895-949)||(17307904-17307958)
chr7 (891-949)||(24339653-24339711)
chr7 (895-960)||(16341496-16341561)
chr7 (892-961)||(32308119-32308188)
[»] chr2 (2 HSPs)
chr2 (903-949)||(44605141-44605187)
chr2 (901-963)||(31026692-31026754)
[»] scaffold0349 (1 HSPs)
scaffold0349 (801-846)||(16263-16308)
[»] chr8 (6 HSPs)
chr8 (901-960)||(12985392-12985451)
chr8 (891-949)||(22651987-22652045)
chr8 (801-839)||(29270983-29271021)
chr8 (891-949)||(29447100-29447158)
chr8 (898-952)||(31681827-31681881)
chr8 (897-962)||(31548289-31548354)
[»] chr4 (6 HSPs)
chr4 (890-949)||(24613690-24613749)
chr4 (891-961)||(35723374-35723445)
chr4 (913-964)||(44796974-44797025)
chr4 (936-974)||(18727855-18727893)
chr4 (888-949)||(4383379-4383439)
chr4 (895-960)||(18513235-18513300)


Alignment Details
Target: chr6 (Bit Score: 611; Significance: 0; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 15 - 803
Target Start/End: Original strand, 31289608 - 31290370
Alignment:
Q  15 acacttctctgccagttcagtttcttgtgtaaaaacacagctgcagcaacctgtactggatgttgataaatggttgcca-------caacatattctcgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  31289608 acacttctctgccagttcagtttcttgtgtaaaaacacagctgcagcaacctgtactggatgttgataaatggttgccagagagtgcaacatattctcgg 31289707  T
Q  108 tgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagagatatggctcacatcagtgccn 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31289708 tgaaaggttgttatcaagatctgtgatatttgcattttcccaatgatttcaatgatgaattattgaaggcagtgcagagatatggctcacatcagtgcca 31289807  T
Q  208 nnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaa 307  Q
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          ||||||          
T  31289808 aaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattccctatggac----------gcgatc------ 31289891  T
Q  308 actttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgca 407  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289892 ------gatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgca 31289985  T
Q  408 tcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31289986 tcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgctgtcacactttttctcctctgttgctaccaat 31290085  T
Q  508 ggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattctttctcttcaatggagactattacaccgt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  31290086 ggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattctttctcttctatggagactattacaccat 31290185  T
Q  608 gaacaaaatgaggatattatatagcttagatagataacttgtagtacaagttatcttagtgtagtactatagagtagtacattctattttactagtactt 707  Q
    || |||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290186 gagcaaaatgaggatattatatagcttaga-----------tagtacaagttatcttagtgtagtactatagagtagtacattctattttactagtactt 31290274  T
Q  708 gtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgatactgaca 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290275 gtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgatactgaca 31290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 51 - 397
Target Start/End: Original strand, 26651948 - 26652300
Alignment:
Q  51 acagctgcagcaacctgtactggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgtt 143  Q
    |||||||||| |||||||| |||||||||||||||||||||||       ||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  26651948 acagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtgatatttgcgtt 26652047  T
Q  144 ttcccaatgatttcaatgatgaattattgaaggcagtgcagagat-atggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgag 242  Q
    || ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||        ||||||||| || || |||| |||| ||    
T  26652048 tttccaatgatttcaaggatgaattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa--aatgtgtttggtttgggactcttacaag 26652145  T
Q  243 atagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccact 342  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |||||||||| |||||||| ||    
T  26652146 atagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgct 26652245  T
Q  343 cactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct 397  Q
    || ||||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  26652246 caatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct 26652300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 51 - 397
Target Start/End: Original strand, 26757916 - 26758268
Alignment:
Q  51 acagctgcagcaacctgtactggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgtt 143  Q
    |||||||||| |||||||| |||||||||||||||||||||||       ||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  26757916 acagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtgatatttgcgtt 26758015  T
Q  144 ttcccaatgatttcaatgatgaattattgaaggcagtgcagagat-atggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgag 242  Q
    || ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||        ||||||||| || || |||| |||| ||    
T  26758016 tttccaatgatttcaaggatgaattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa--aatgtgtttggtttgggactcttacaag 26758113  T
Q  243 atagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccact 342  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |||||||||| |||||||| ||    
T  26758114 atagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgct 26758213  T
Q  343 cactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct 397  Q
    || ||||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  26758214 caatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct 26758268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 801 - 985
Target Start/End: Original strand, 31290408 - 31290598
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 900  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290408 acagaaactacatgaggctcgaggcacctgtattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 31290507  T
Q  901 cgacaccgacatatgtaat------tacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtcaatgttaattt 985  Q
     ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31290508 tgacaccgacatatgtaattacgtatacattcatttatgttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattt 31290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 100 - 445
Target Start/End: Complemental strand, 27421403 - 27421059
Alignment:
Q  100 attctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagagat-atggctcaca 198  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| |||| ||||||||||    
T  27421403 attctcagagaaaggatgttatcaagagctgtgaaatttgcgtttttc-aatgatttcgacgatgaattattgaaggcagtgcatagattatggctcaca 27421305  T
Q  199 tcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcg 298  Q
    |||||||        |  ||||| | ||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  27421304 tcagtgctaaaaaaagt-tgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacg 27421206  T
Q  299 atccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatcccta 398  Q
    ||||||||||||||| ||||||||||||||||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||     
T  27421205 atccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctg 27421106  T
Q  399 atttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt 445  Q
     |||||||||| | || ||| |||||  |||||||||||||||||||    
T  27421105 gtttctgcatcatcatattttatcccagcggtgatgagtgctgattt 27421059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 272 - 422
Target Start/End: Original strand, 26632715 - 26632865
Alignment:
Q  272 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 371  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26632715 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26632814  T
Q  372 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 422  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26632815 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 272 - 422
Target Start/End: Original strand, 26738691 - 26738841
Alignment:
Q  272 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 371  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26738691 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26738790  T
Q  372 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 422  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26738791 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26738841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 484 - 581
Target Start/End: Complemental strand, 27421061 - 27420964
Alignment:
Q  484 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattcttt 581  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  27421061 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacatccatagcactcttt 27420964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 333 - 549
Target Start/End: Original strand, 31394770 - 31394987
Alignment:
Q  333 cagttccactcactgacgcagtggtgg-aaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtg 431  Q
    ||||||| | ||||| ||||||||||| |||| |||||||||| |||||||||||||||||| | |  ||| |||||| | |||||| ||||   ||||     
T  31394770 cagttccccgcactgtcgcagtggtggtaaacgtcacaacacctgaccttcagcttcaatatacatggtttttgcatcatcatctttaatccatgcggtt 31394869  T
Q  432 atgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggtgtt 531  Q
    ||||  || |||||||||    |||||| ||||| |   ||| |||||||| |||||||||||| |||||  || ||||||||| |||  ||||||| |     
T  31394870 atgaacgcagatttcgttattgggcggcaatttctgatcatttctgtcacagtttttctcctctattgctggcattggatagagcaaaacttggggtttg 31394969  T
Q  532 cagcttcttgtctctggc 549  Q
     | |||||||||||||||    
T  31394970 aatcttcttgtctctggc 31394987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 749 - 797
Target Start/End: Original strand, 26952498 - 26952546
Alignment:
Q  749 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 797  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26952498 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26952546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 749 - 797
Target Start/End: Original strand, 26961991 - 26962039
Alignment:
Q  749 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 797  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26961991 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26962039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 749 - 797
Target Start/End: Original strand, 26980289 - 26980337
Alignment:
Q  749 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 797  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  26980289 ttgagtcaggtttgttgttgttttattttgcaatatatagtatttgata 26980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 910 - 975
Target Start/End: Original strand, 2820373 - 2820438
Alignment:
Q  910 catatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtca 975  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||| |  ||| ||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggtatttacatatcaatgtca 2820438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 26649356 - 26649393
Alignment:
Q  749 ttgagtcaggttagttgttgttttatcttgcaatatat 786  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26649356 ttgagtcaggttcgttgttgttttatcttgcaatatat 26649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 26755324 - 26755361
Alignment:
Q  749 ttgagtcaggttagttgttgttttatcttgcaatatat 786  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26755324 ttgagtcaggttcgttgttgttttatcttgcaatatat 26755361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 801 - 846
Target Start/End: Complemental strand, 27608295 - 27608250
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaattcccaaac 846  Q
    |||||||||||||||||||||| |||||||| || |||||||||||    
T  27608295 acagaaactacatgaggctggatgcacctattttgaattcccaaac 27608250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 801 - 846
Target Start/End: Complemental strand, 27715682 - 27715637
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaattcccaaac 846  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  27715682 acagaaactacatcaggctggatgcacctatattaaattcccaaac 27715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 891 - 963
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 963  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 891 - 963
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 963  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 801 - 848
Target Start/End: Original strand, 26058891 - 26058938
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 848  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26058891 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26058938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 801 - 848
Target Start/End: Original strand, 26078861 - 26078908
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 848  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26078861 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26078908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 890 - 961
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  890 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 890 - 948
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  890 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 948  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 903 - 952
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  903 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 952  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 891 - 960
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 960  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 891 - 948
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 948  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 26632634 - 26632711
Alignment:
Q  95 aacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattg 172  Q
    |||| ||||||||||||||| |||||||||||   |||| ||||   ||||| | |||||||| ||||||||||||||    
T  26632634 aacagattctcggtgaaaggatgttatcaagagtagtgaaattttgtttttcacgatgatttcgatgatgaattattg 26632711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 26738610 - 26738687
Alignment:
Q  95 aacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattg 172  Q
    |||| ||||||||||||||| |||||||||||   |||| ||||   ||||| | |||||||| ||||||||||||||    
T  26738610 aacagattctcggtgaaaggatgttatcaagagtagtgaaattttgtttttcacgatgatttcgatgatgaattattg 26738687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 802 - 835
Target Start/End: Original strand, 26876539 - 26876572
Alignment:
Q  802 cagaaactacatgaggctggaggcacctatattc 835  Q
    ||||||||||||||||||||| ||||||||||||    
T  26876539 cagaaactacatgaggctggatgcacctatattc 26876572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 907 - 952
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  907 cgacatatgtaattacattcatttatgttattttctcaaattacta 952  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 909 - 962
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  909 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 962  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 146; Significance: 2e-76; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 100 - 445
Target Start/End: Original strand, 65960 - 66304
Alignment:
Q  100 attctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagagat-atggctcaca 198  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| |||| ||||||||||    
T  65960 attctcagagaaaggatgttatcaagagctgtgaaatttgcgtttttc-aatgatttcgacgatgaattattgaaggcagtgcatagattatggctcaca 66058  T
Q  199 tcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcg 298  Q
    |||||||        |  ||||| | ||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  66059 tcagtgctaaaaaaagt-tgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacg 66157  T
Q  299 atccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatcccta 398  Q
    ||||||||||||||| ||||||||||||||||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||     
T  66158 atccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctg 66257  T
Q  399 atttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt 445  Q
     |||||||||| | || ||| |||||  |||||||||||||||||||    
T  66258 gtttctgcatcatcatattttatcccagcggtgatgagtgctgattt 66304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 484 - 581
Target Start/End: Original strand, 66302 - 66399
Alignment:
Q  484 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattcttt 581  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  66302 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacatccatagcactcttt 66399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 842 - 973
Target Start/End: Complemental strand, 264724 - 264591
Alignment:
Q  842 caaacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattt 939  Q
    |||||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||    
T  264724 caaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactt 264625  T
Q  940 tctcaaattactatcggtgtcgacaaatcaatgt 973  Q
    ||| |||||| ||| |||| ||||||||||||||    
T  264624 tcttaaattaatattggtgacgacaaatcaatgt 264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 903 - 963
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  903 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 963  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 913 - 957
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  913 atgtaattacattcatttatgttattttctcaaattactatcggt 957  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 918 - 961
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  918 attacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 961
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 897 - 959
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  897 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 959  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 630 - 660
Target Start/End: Original strand, 18008612 - 18008642
Alignment:
Q  630 agcttagatagataacttgtagtacaagtta 660  Q
    |||||||||||||||||||||||||||||||    
T  18008612 agcttagatagataacttgtagtacaagtta 18008642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 895 - 949
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 908 - 954
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  908 gacatatgtaattacattcatttatgttattttctcaaattactatc 954  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 918 - 963
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  918 attacattcatttatgttattttctcaaattactatcggtgtcgac 963  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 897 - 964
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  897 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 964  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 891 - 949
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 954
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  896 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 954  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 895 - 964
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 964  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 897 - 940
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  897 gacacgacaccgacatatgtaattacattcatttatgttatttt 940  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 961
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 961
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 897 - 959
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  897 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 959  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 898 - 959
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  898 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 959  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 948
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 948  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 847 - 952
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  847 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 944  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  945 aattacta 952  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 890 - 961
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  890 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 891 - 959
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 959  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 964
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  913 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 964  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 905 - 960
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  905 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 960  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 963
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  901 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 963  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 960
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 960  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 896 - 949
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  896 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 888 - 949
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  888 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 958
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 958  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 905 - 952
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  905 accgacatatgtaattacattcatttatgttattttctcaaattacta 952  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 895 - 949
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 24339711 - 24339653
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 960
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 960  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 892 - 961
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  892 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 961  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 903 - 949
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  903 acaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 963
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  901 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 963  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 801 - 846
Target Start/End: Original strand, 16263 - 16308
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaattcccaaac 846  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  16263 acagaaactacatcaggctggatgcacctatattaaattcccaaac 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 960
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  901 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 960  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 839
Target Start/End: Complemental strand, 29271021 - 29270983
Alignment:
Q  801 acagaaactacatgaggctggaggcacctatattcaatt 839  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29271021 acagaaactacatgagactggatgcacctatattcaatt 29270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 949
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 898 - 952
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  898 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 952  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 897 - 962
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  897 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 962  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 890 - 949
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  890 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 891 - 961
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  891 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 961  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 964
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  913 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 964  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  936 attttctcaaattactatcggtgtcgacaaatcaatgtc 974  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 888 - 949
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  888 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 949  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 960
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  895 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 960  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

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