View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_10 (Length: 392)
Name: NF19704_low_10
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 47957330 - 47957714
Alignment:
| Q |
1 |
aacttttatatgtttagaataattagaggtcattatggactatgagtctatggtcactataggcaccttaatcttaattgaaattgaaatataaatttga |
100 |
Q |
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| T |
47957330 |
aacttttatatgtttagaataattagaggtcattatggactatgagtctatggtcactataggcaccttaat------tgaaattgaaatataaatttga |
47957423 |
T |
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| Q |
101 |
ctggtgatttcatcatgacaactaaaccattcatgtatttgtttttcataattcgacctaagaatccaaatattaatgtgtattttaacaacaaaaacca |
200 |
Q |
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| T |
47957424 |
ctggtgatttcatcatgacaactaaaccattcatgtatttgtttttcataattcgacctaagaatccaaatattaatgtgtattttaacaacaaaaacca |
47957523 |
T |
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| Q |
201 |
ttaggaatttaaatgtgaaatggtctcactttatgatgatcatagctagttatctgtcattttgacagtatcaagtgcaattttcccctcttgatagcac |
300 |
Q |
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| T |
47957524 |
ttaggaatttaaatgtgaaatggtctcactt-atgatgatcatagctagttatctgtcattttgacagtatcaagtgcaattttcccctcttgatagcac |
47957622 |
T |
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| Q |
301 |
ctatagttaatatcaccataatttttgacatttttatacacccttggacgtttctcatttaccagtccttcaacaggtccaatttcgttcac |
392 |
Q |
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| T |
47957623 |
ctatagttaatatcaccataatttttgacatttttatacacccttggacgtttctcatttaccagtccttcaacaggtccaatttcgttcac |
47957714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 47950215 - 47950359
Alignment:
| Q |
250 |
ttatctgtcattttgacagtatcaagtgc----aattttcccctcttgatagcacctatagttaatatcaccataatttttgacatttttatacaccctt |
345 |
Q |
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| T |
47950215 |
ttatctgcaattttgacagtatcaagtgctatatattttcccctcttgataggtcttgtagttcatttcacaataattttttacgtttctgtacaacctt |
47950314 |
T |
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| Q |
346 |
ggacgtttctcatttaccagtccttcaacaggtccaatttcgttc |
390 |
Q |
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| T |
47950315 |
ggatatgtctcgtttattaggtcttcaaccggtccaatttcgttc |
47950359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 48944579 - 48944611
Alignment:
| Q |
199 |
cattaggaatttaaatgtgaaatggtctcactt |
231 |
Q |
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| T |
48944579 |
cattaggaatttaaatgtgaaatggtctcactt |
48944611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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