View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_12 (Length: 352)
Name: NF19704_low_12
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45457748 - 45457405
Alignment:
| Q |
1 |
actgtaattaataagaagagaagaaaagatgatctgatcacacacttgtattaattctttctttttctctatagagtcatagatagagtatggtgaacta |
100 |
Q |
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| T |
45457748 |
actgtaattaataagaagagaagaaaagatgatctgatcacacacttgtattaattctttctttttctctatagagtcagagatagagtatggtgaacta |
45457649 |
T |
|
| Q |
101 |
gatcagtagcatatacccctacactacactacattatattacacgtatgaatatgatgatatcaatatcaacacatatgttatgatattgactcacagtc |
200 |
Q |
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| T |
45457648 |
gatcagtagcatatacccctacactacactacattatattacacgtatgaatatgatgatatcaatatcaacacatatgttatgatattgactcacagtc |
45457549 |
T |
|
| Q |
201 |
aatcacaaacaacatgtgcattcattcagacatacatagtgatcttcacgttaatgtgaatcaattatattgtatctccttgatctgtcactgtggacgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45457548 |
aatcacaaacaacatgtgcattcattcagacatacatagtgatcttcacgttaatgtgaatcaattatattgtatcaccttgatctgtcactgtggacgg |
45457449 |
T |
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| Q |
301 |
acagcttattattatta---ttataattcatcccctcatttcat |
341 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45457448 |
acagcttattattattattattataattcatcccctcatttcat |
45457405 |
T |
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