View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19704_low_13 (Length: 349)

Name: NF19704_low_13
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19704_low_13
NF19704_low_13
[»] chr3 (2 HSPs)
chr3 (18-341)||(38718677-38719000)
chr3 (267-341)||(3421578-3421652)
[»] chr1 (3 HSPs)
chr1 (269-341)||(13879577-13879649)
chr1 (265-335)||(30143109-30143179)
chr1 (265-328)||(30157757-30157820)
[»] chr7 (3 HSPs)
chr7 (265-341)||(11320029-11320104)
chr7 (300-341)||(10271015-10271056)
chr7 (301-341)||(39678287-39678327)
[»] chr4 (3 HSPs)
chr4 (269-332)||(10728185-10728248)
chr4 (269-332)||(10941954-10942017)
chr4 (265-332)||(38002721-38002788)
[»] chr8 (1 HSPs)
chr8 (265-335)||(24411019-24411089)
[»] chr5 (1 HSPs)
chr5 (265-335)||(42774102-42774172)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 38719000 - 38718677
Alignment:
Q  18 aatgtctgacaggtcttgaatatgattacatttagttgaggggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtctta 117  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38719000 aatgtctgataggtcttaaatatgattacatttagttgagaggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtctta 38718901  T
Q  118 ccttgatgagtacatcaacaacctcagtgaatcctctgcaacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718900 ccttgatgagtacatcaacaacctcagtgaatcctctgcaacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatcag 38718801  T
Q  218 tagttcagcaaatcttgcatgtcccacatagcttgcttcaagtaaagcctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718800 tagttcagcaaatcttgcatgtcccacatagcttgcttcaagtaaagcctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatatt 38718701  T
Q  318 ttcaaatggccttccctctctgct 341  Q
    |||||||||||||||||| |||||    
T  38718700 ttcaaatggccttccctcactgct 38718677  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 3421652 - 3421578
Alignment:
Q  267 tcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctctctgct 341  Q
    |||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  3421652 tcttcagatgcaagttgtgatgttccaccattgataaggacctccaatattttcaaatgaccttccctcactgct 3421578  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 13879577 - 13879649
Alignment:
Q  269 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctctctgct 341  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  13879577 ttcacatgcaagttgtgacgccccaccattgataaggatctccaatattttcaaatggccttccctcactgct 13879649  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 30143179 - 30143109
Alignment:
Q  265 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 335  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  30143179 cctcttcgcatgcaagttgtgacgctccaccattgataatgacctccaatattttcaaatggcctaccctc 30143109  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 30157820 - 30157757
Alignment:
Q  265 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggcc 328  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  30157820 cctcttcacatgcaagttgtgacgctccaccattgataataacctccaatattttcaaatggcc 30157757  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 11320104 - 11320029
Alignment:
Q  265 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctctctgct 341  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11320104 cctcttcacatgcaagttgtga-gtcccaccattgataaggacctccaatattttcaaatggccttccctcactgct 11320029  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 10271056 - 10271015
Alignment:
Q  300 ataaggacctccaatattttcaaatggccttccctctctgct 341  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  10271056 ataaggacctctaatattttcaaatggccttccctcactgct 10271015  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 39678287 - 39678327
Alignment:
Q  301 taaggacctccaatattttcaaatggccttccctctctgct 341  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  39678287 taaggacttccaatattttcaaatggccttccctcactgct 39678327  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 10728185 - 10728248
Alignment:
Q  269 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 332  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10728185 ttcacatgtaagttgtgacgccccaccattgataaggacctccaatattttcaaatggtcttcc 10728248  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 10941954 - 10942017
Alignment:
Q  269 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 332  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10941954 ttcacatgtaagttgtgacgccccaccattgataaggacctccaatattttcaaatggtcttcc 10942017  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 38002721 - 38002788
Alignment:
Q  265 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 332  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  38002721 cctcttcacatgcaagttgtgacaccccaccattgataaggacctccaatattttaaaatggtcttcc 38002788  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 24411019 - 24411089
Alignment:
Q  265 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 335  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  24411019 cctcttcacatgcaatttgtgactcctcaccattgataaggacctccaatattttcaattggccttccctc 24411089  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 42774172 - 42774102
Alignment:
Q  265 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 335  Q
    ||||||||||||||||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||    
T  42774172 cctcttcacatgcaagttgtgacactccactattgataaagacctgcaatattttcaaatggccttccctc 42774102  T

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