View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_2 (Length: 717)
Name: NF19704_low_2
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-151; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 33076445 - 33076741
Alignment:
| Q |
18 |
atcactttgtcactattttaaatcaatgttgataaaggattaattaatttgattaaaagatagtatgaatctgatgaagaataaacatattgagtgtgag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
33076445 |
atcactttgtcactattttaaatcaatgttgataaaggattaattaatttgattaaaagatggtatgaatttgatgaagaataaacatattgagtgtgag |
33076544 |
T |
|
| Q |
118 |
aagctgattatgatgcattagtttgctaacttgtttgaagttggatgggagagttcaagatcacaactttgtcacaactatttgttttcaattaggattg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33076545 |
aagctgattatgatgcattagtttgctaacttgtttgaagttggatgggagagttcaagatcacaactttgtcacaactatgtgttttcaattaggattg |
33076644 |
T |
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| Q |
218 |
ataaactatatggcatatcagtcaatcatatcatattgcaaattattttaaggttgaacatcatcaaactgttacaactcaattgttaaatacatttga |
316 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33076645 |
ataaac--tatgacatatcagtcaatcatatcatattgcaaattattttaaggttgaacatcatcaaactgttacaactcaattgttaaatacatttga |
33076741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 33071852 - 33072147
Alignment:
| Q |
18 |
atcactttgtcactattttaaatcaatgttgataaaggattaattaatttgattaaaagatagtatgaatctgatgaagaataaacatattgagtgtgag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33071852 |
atcactttgtcactattttaaatcaatgttgataaaggattcattaatttgattaaaagatagtatgaatttgatgaagaataaacatattgagtgtgag |
33071951 |
T |
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| Q |
118 |
aagctgattatgatgcattagtttgctaacttgtttgaagttggatgggagagttcaagatcacaactttgtcacaactatttgttttcaattaggattg |
217 |
Q |
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| T |
33071952 |
aagctgattatgatgcattagtttgctaacttgtttgaagttggatgggagagttcaagatcacaactttgtcacaactatgtgttttcaattaggattg |
33072051 |
T |
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| Q |
218 |
ataaactatatggcatatcagtcaatcatatcatattgcaaattattttaaggttgaacatcatcaaactgttacaactcaattgttaaatacatttga |
316 |
Q |
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| T |
33072052 |
ataaac--tatggc-tatcagtcaatcatatcatattgcaaattattttaaggttgaacatcatcaaactgttacaactcaattgttaaatacatttga |
33072147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 33070048 - 33070344
Alignment:
| Q |
18 |
atcactttgtcactattttaaatcaatgttgataaaggattaattaatttgattaaaagatagtatgaatctgatgaagaataaacatattgagtgtgag |
117 |
Q |
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|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33070048 |
atcactttgtcactattttaaatcaatgtttataaaagattaattaatttgattaaaagatagtatgaatttgatgaagaataaacatattgagtgtgag |
33070147 |
T |
|
| Q |
118 |
aagctgattatgatgcattagtttgctaacttgtttgaagttggatgggagagttcaagatcacaactttgtcacaactatttgttttcaattaggattg |
217 |
Q |
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| T |
33070148 |
aagctgattatgatgcattagtttgctaacttgtttgaagttggataggagagttcaagatcacaactttgtcacaactatgtgttttcaattaggattg |
33070247 |
T |
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| Q |
218 |
ataaactatatggcatatcagtcaatcatatcatattgcaaattattttaaggttgaacatcatcaaactgttacaactcaattgttaaatacatttga |
316 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33070248 |
ataaac--tatggcgtatcagtcaatcatatcatattgcaaattattttaaggttgaacatcatcaaactgttacaactcaattgttaaatacatttga |
33070344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 312 - 472
Target Start/End: Original strand, 33077095 - 33077255
Alignment:
| Q |
312 |
tttgaattactgtaaatagggatatcatggtggttataagttagccaaacttaaccaaaaaggtgcagagccactgcattagtagggtgtaaaattccac |
411 |
Q |
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|||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33077095 |
tttgaattactgtaaataaggatatcatggtggttacaggttagccaaacttaaccaaaaaggtgcagagccactgcactagtagggtgtaaaattccac |
33077194 |
T |
|
| Q |
412 |
taaaattacaaccacaaaagcaaatacaccaccttcacaacagaaaactctaacgccctag |
472 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
33077195 |
taaaattacaaccacaaaagcaaatacaccaccttcaaaacagaaaactctaactccctag |
33077255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 572 - 706
Target Start/End: Original strand, 33077354 - 33077488
Alignment:
| Q |
572 |
gactctaatgctcataagtagaaactgtttctagaccggttttcttatggttaggaagcatttgcgtgttctgttcgtacccgactgtttttgcggctct |
671 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33077354 |
gactctaatgctcataagtagaaactgtttctagaccggttttcttatggttaggaagcatttgcgtgttctgttcatacccgactgtttttgcggctct |
33077453 |
T |
|
| Q |
672 |
gctgttccggtattttgccaagtttcacacctttg |
706 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
33077454 |
gctgttccggtattttgctaagtttcacacctttg |
33077488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 41500702 - 41500776
Alignment:
| Q |
406 |
ttccactaaaattacaaccacaaaagcaaatacaccaccttcacaacagaaaactctaacgccctagtacctcca |
480 |
Q |
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|||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
41500702 |
ttccactaaaattacagctagaaaagcaaatacaccaccttcaaaacagaaaactctaactccctagtacctcca |
41500776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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