View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_20 (Length: 238)
Name: NF19704_low_20
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6335872 - 6335654
Alignment:
| Q |
1 |
ttatcttgattaatttttt-gattaatttttatgatcatggtgaaaataattgtttaagatctgtttagattaattaaagatttgtttgtttttgtttaa |
99 |
Q |
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| T |
6335872 |
ttatcttgatttatttttttgattaatttttatcatcatggtaaaataaattggttaagatctgtttagattaattaaagatttgtttgtttttatttaa |
6335773 |
T |
|
| Q |
100 |
agaaaagaggttttggtcaaattaattttgtctaataatgtagcgtggaaatagcattcaatcatcatatacattcaacagatagtttttctgtttgaat |
199 |
Q |
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| T |
6335772 |
agagaagaggttttggtcaaattaatttggtcgtataatgtagcgtggaaatagaattcaatcatcatatacattcaacagatagtttttctgtttgaat |
6335673 |
T |
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| Q |
200 |
tttctctattttttaaaaa |
218 |
Q |
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| T |
6335672 |
tttctatattttttaaaaa |
6335654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6350857 - 6350616
Alignment:
| Q |
1 |
ttatcttgattaattttttgattaattttt-atgatcatggtgaaaataattgtttaagatctgtttagattaattaaagatttgtttgtttttgtttaa |
99 |
Q |
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| T |
6350857 |
ttatcttgacttattttttgattaattttttatgatcatggtaaaataaattggttaagatctgtttagattaattaaagatttgtttgtttttatttaa |
6350758 |
T |
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| Q |
100 |
agaaaagagg-ttttggtcaaattaattttgtctaataatgtagcgtggaaatagcattca----------------atcatcatatacattcaacagat |
182 |
Q |
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| T |
6350757 |
agaaaagaggtttttggtcaaattaatttggtcgtataatgtagcgtggaaatagcattaagtagtttctgtggatcatcatcatatacattcaacaaat |
6350658 |
T |
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| Q |
183 |
agtttttctgtttgaattttctctattttttaaaaacaaaat |
224 |
Q |
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| T |
6350657 |
actttttctgtttgaattttctctattttttaaaaacaaaat |
6350616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6328314 - 6328085
Alignment:
| Q |
1 |
ttatcttgattaattttttgattaattttt-atgatcatggtgaaaataattgtttaagatctgtttagattaattaaagatttgtttgtttttgtttaa |
99 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6328314 |
ttatcttgatttattttttgattaattttttatgatcatggtaaaataaattggttaagatctgtttagattaattaaagatttgtttgtttttatttaa |
6328215 |
T |
|
| Q |
100 |
agaaaagaggttttggtcaaattaattttgtctaataatgtagcgtggaaatag---cattca---atcatcatatacattcaacagatagtttttctgt |
193 |
Q |
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| T |
6328214 |
agaaaagaggttttggtcaaattaatttggtcgtataatgtaacat-taagtagtttctgtgaatcatcatcatatacattcaacaaatactttttctgt |
6328116 |
T |
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| Q |
194 |
ttgaattttctctattttttaaaaacaaaat |
224 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6328115 |
ttgaattttctctattttttaaaaacaaaat |
6328085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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