View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_22 (Length: 224)
Name: NF19704_low_22
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 64715 - 64932
Alignment:
| Q |
1 |
cttctatttctaatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaacca |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
64715 |
cttctatttctaatgcagttgcaaaggtttttctagaggtgaatcatcattattgtatgtggca---tattgagaagaaagttccagagtacttgaacca |
64811 |
T |
|
| Q |
101 |
aatctatcatgaacatagcgagtttaaaaatcaatttcacaaatgcattcatcaaactatcacttctgatgactttgattctgattggggagcaatgatg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
64812 |
aatctatcatcaacatagcgagtttaaaaatcaatttcacaagtgcattcaccaaactatcacttcttatgactttgattctgattggggagcaatgata |
64911 |
T |
|
| Q |
201 |
gataagtacgagttgcaagat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
64912 |
gataagtacgagttgcaagat |
64932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 22639371 - 22639521
Alignment:
| Q |
10 |
ctaatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaaccaaatctatca |
109 |
Q |
| |
|
||||||||||||||||||| ||||| | || |||||||| || |||||||||| |||| ||| || ||||||||||||||||||| | ||||| |||| |
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| T |
22639371 |
ctaatgcagttgcaagagtgtttccgaatgttaatcatcattactgtatgtggc-gcat--tgaaaa-aaagttccagagtacttgagcgaaatccatca |
22639466 |
T |
|
| Q |
110 |
tgaacatagcgagtttaaaaatcaatttcacaaatgcattcatcaaactatcact |
164 |
Q |
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|
|||||| || || ||||||| ||||||| |||| || ||||| ||| | |||||| |
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|
| T |
22639467 |
tgaacacagtgattttaaaagtcaattttacaagtgtattcaccaatcaatcact |
22639521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51166711 - 51166929
Alignment:
| Q |
1 |
cttctatttctaatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||| |
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|
| T |
51166711 |
cttctatttctaatgcagttgcaaaggtttttccaaaggtgaatcatcattattgtatgtggca---tatcgagaataaagttccagagtacttgaacca |
51166807 |
T |
|
| Q |
101 |
aatctatcatgaacatagcgagtttaaaaatcaatttcacaaatgcattcatcaaactatcacttctgatgactttgattctga-ttggggagcaatgat |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| || |||||||||||| |
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|
| T |
51166808 |
aatctatcatgaacatggcgagtttaaaaatcaatttcacaagtgcattcaccaaactatcacttatgatgactttgattctgatttcgggagcaatgat |
51166907 |
T |
|
| Q |
200 |
ggataagtacgagttgcaagat |
221 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
51166908 |
aaataagtacgagttgcaagat |
51166929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 16081078 - 16081234
Alignment:
| Q |
1 |
cttctatttctaatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaacca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
16081078 |
cttctatttctaatgcagttgcacaggtttttccagaggtgaatcatcactattgtatgtggca---tattcagaagaaagttccagagtacttgaacca |
16081174 |
T |
|
| Q |
101 |
aatctatcatgaacatagcgagtttaaaaatcaatttcacaaatgcattcatcaaactat |
160 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||| |
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|
| T |
16081175 |
aatctatcatgaacatagtgagtttaaaaatcaatttcagaagtgcattcgccaaactat |
16081234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48773180 - 48773397
Alignment:
| Q |
1 |
cttctatttctaatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaacca |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
48773180 |
cttctatttctaatgcagctgcacaggtttttccagaggtgaatcatcactattgtatgtggca---tattgagaagaaagttcgagagtacttgaacca |
48773276 |
T |
|
| Q |
101 |
aatctatcatgaacatagcgagtttaaaaatcaatttcacaaatgcattcatcaaactatcacttctgatgactttgattctgattggggagcaatgatg |
200 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |
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|
| T |
48773277 |
aatttatcatgaacatagtaagtttaaaaatcaatttcacaagtgcattcatcaaactatcactacttatgactttgattcttattggggagcaatgata |
48773376 |
T |
|
| Q |
201 |
gataagtacgagttgcaagat |
221 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
48773377 |
gataattatgagttgcaagat |
48773397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 19329669 - 19329789
Alignment:
| Q |
3 |
tctatttctaatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaaccaaa |
102 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||| | |||||| |||||||||||||| || |||||||||||||| ||||||||| ||||| | |
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|
| T |
19329669 |
tctatttctaatgcagttgtaaaggtttttccctaggtcattcatcattattgtatgtggca---taatgagaagaaagttctagagtacttaaaccata |
19329765 |
T |
|
| Q |
103 |
tctatcatgaacatagcgagttta |
126 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
19329766 |
tctagcatgaacatagtgagttta |
19329789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 44885319 - 44885113
Alignment:
| Q |
12 |
aatgcagttgcaagagtttttccagaggtgaatcatcactattgtatgtggcagcatattgagaagaaagttccagagtacttgaaccaaatctatcatg |
111 |
Q |
| |
|
|||||||||||||| || |||||| |||| ||||| || ||||| |||||||| ||||||| | |||||||||||| || || | || |||||||||| |
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|
| T |
44885319 |
aatgcagttgcaagggtgtttccaaaggttaatcaccattattgcatgtggca---tattgaggaaaaagttccagagcacatggatcatatctatcatg |
44885223 |
T |
|
| Q |
112 |
aacatagcgagtttaaaaatcaatttcacaaatgcattcatcaaactatcacttctgatgactttgattctgattggggagcaatgatggataagtacga |
211 |
Q |
| |
|
||| || || ||||||||||| ||| |||| |||||||| ||| |||| || ||| || ||||| ||||| |||| ||||||| | ||||| || | |
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|
| T |
44885222 |
gacacagtgaatttaaaaatcatttttacaagtgcattcaccaatctattacaattgaagaatttgactctgaatgggaagcaatggttgataaatatgg |
44885123 |
T |
|
| Q |
212 |
gttgcaagat |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
44885122 |
gttgcaagat |
44885113 |
T |
|
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