View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_4 (Length: 465)
Name: NF19704_low_4
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 16398913 - 16398477
Alignment:
| Q |
19 |
atacaataattgtttagtataaaaaagcttttacctgtaagtannnnnnnnnngtgacaacatgattggattattatgctgccaattaattcattcatac |
118 |
Q |
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| T |
16398913 |
atacaataattgtttagtataaaaaagcttttacccgtaagtaatttttttttgtgacaacatgattggattattatgctgccaattaattcat----ac |
16398818 |
T |
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| Q |
119 |
ttggagtgagaattaccacaccaacat--gtgtcaacatagttagattagaaagatgttttcataattgtccaaatactaagatacatatttaggattcg |
216 |
Q |
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| T |
16398817 |
ttggagtgagaattaccacaccagcatatgtgtcaacatagttagattagaaagatgttttcataattgtccaaacactaacatacatatttaggattcg |
16398718 |
T |
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| Q |
217 |
tctaaactgtttgagtttttagcagaataataaaattgtcatggaatggtggaatatacttctcatatacgtagaccatagttaacataaaacacatatc |
316 |
Q |
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| T |
16398717 |
tcaaaactgtttgagttttcagcggaataataaaattttcatggaatggtggaatatacttctcatatacgtagaccgtagttaacataaaacacatatc |
16398618 |
T |
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| Q |
317 |
ggctagtatgcactgtcaaatagttctgcaaatcctaagctcaaggaaactttcaagtataaccatgatcaatatcatatgattgaaatgattatggtcc |
416 |
Q |
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| T |
16398617 |
ggctagtatgcattgtcaaatagttctgcaaatcataagctcaaggaaactttcaagtataaccatgatcaatatcatatgattgaaatgattatggtcc |
16398518 |
T |
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| Q |
417 |
aaaatcattttgaaagcaaacataggagactatctcattgc |
457 |
Q |
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| T |
16398517 |
aaaatcatcttgaaagcaaacataggagactatctcattgc |
16398477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 1672115 - 1672304
Alignment:
| Q |
76 |
caacatgattggattattatgctgccaattaattcattcatacttggagtgagaattaccacaccaacat--gtgtcaacatagttagattagaaagatg |
173 |
Q |
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| T |
1672115 |
caacatgattggattattatgctgccaattaattcat----acttgcaatgagaattataacaccagcatatgtgtcaacatggttagattagaaagatg |
1672210 |
T |
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| Q |
174 |
ttttcataattgtccaaatactaagatac---atatttaggattcgtctaaactgtttgagtttttagcagaataataaaattgtcatggaatggtg |
267 |
Q |
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| T |
1672211 |
tttttataattgtccgcatactaacatgcataatatttaggattcgtctaaactgt---agttttcagcagaataataaaactgtcatggaatggtg |
1672304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 21124892 - 21124831
Alignment:
| Q |
265 |
gtggaatatacttctcatatacgtagaccatagttaacataaaacacatatcggctagtatg |
326 |
Q |
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| T |
21124892 |
gtggaacatactcctcatatacgtagaccatagttaacataaaacacataacagctagtatg |
21124831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 1672678 - 1672725
Alignment:
| Q |
279 |
tcatatacgtagaccatagttaacataaaacacatatcggctagtatg |
326 |
Q |
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| T |
1672678 |
tcatatacgtacaccatagttaacataaaacacataacagctagtatg |
1672725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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