View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19704_low_5 (Length: 451)
Name: NF19704_low_5
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_5 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 6351427 - 6350986
Alignment:
| Q |
1 |
ttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctcccatccttca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6351427 |
ttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttcg |
6351328 |
T |
|
| Q |
101 |
gccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgacctaaacg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6351327 |
gccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccac---------aaccgtcacaccaacaaccatcttatcttgacctaaacg |
6351237 |
T |
|
| Q |
201 |
acggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6351236 |
acggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtagtggacgttggaat |
6351137 |
T |
|
| Q |
301 |
atgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6351136 |
atgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaa |
6351037 |
T |
|
| Q |
401 |
gatgctattactgctggaaagagtataagggctgttaatgaagctggctta |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6351036 |
gatgctattactgctggaaagagtataaggtctgttaatgaagctggctta |
6350986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 6328884 - 6328443
Alignment:
| Q |
1 |
ttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctcccatccttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
6328884 |
ttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctaccatccttca |
6328785 |
T |
|
| Q |
101 |
gccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgacctaaacg |
200 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6328784 |
gccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccac---------aaccgtcacaccaacaaccatcttatcttgacctaaacg |
6328694 |
T |
|
| Q |
201 |
acggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328693 |
acggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaat |
6328594 |
T |
|
| Q |
301 |
atgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328593 |
atgggctatgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaa |
6328494 |
T |
|
| Q |
401 |
gatgctattactgctggaaagagtataagggctgttaatgaagctggctta |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6328493 |
gatgctattactgctggaaagagtataaggtctgttaatgaagctggctta |
6328443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 6336442 - 6336001
Alignment:
| Q |
1 |
ttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctcccatccttca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6336442 |
ttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctcccatccttcg |
6336343 |
T |
|
| Q |
101 |
gccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgacctaaacg |
200 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6336342 |
gccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccac---------aaccgtcacaccaacaaccatcttatcttgacctaaacg |
6336252 |
T |
|
| Q |
201 |
acggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336251 |
acggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaat |
6336152 |
T |
|
| Q |
301 |
atgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336151 |
atgggctatgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaa |
6336052 |
T |
|
| Q |
401 |
gatgctattactgctggaaagagtataagggctgttaatgaagctggctta |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6336051 |
gatgctattactgctggaaagagtataaggtctgttaatgaagctggctta |
6336001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University