View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19704_low_6 (Length: 426)

Name: NF19704_low_6
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19704_low_6
NF19704_low_6
[»] chr3 (11 HSPs)
chr3 (1-413)||(19332185-19332599)
chr3 (120-337)||(19373880-19374098)
chr3 (165-337)||(19398150-19398318)
chr3 (1-110)||(26952525-26952634)
chr3 (52-112)||(18090365-18090425)
chr3 (1-112)||(29078892-29079002)
chr3 (46-110)||(37333177-37333241)
chr3 (1-112)||(20936143-20936253)
chr3 (355-413)||(19374088-19374145)
chr3 (7-112)||(19554917-19555021)
chr3 (36-111)||(26919376-26919451)
[»] chr4 (15 HSPs)
chr4 (1-112)||(36755113-36755224)
chr4 (27-112)||(13205684-13205769)
chr4 (1-93)||(36284660-36284754)
chr4 (1-112)||(46433205-46433315)
chr4 (1-111)||(56192216-56192326)
chr4 (7-112)||(16529831-16529936)
chr4 (46-112)||(12832454-12832520)
chr4 (36-112)||(37996906-37996982)
chr4 (7-113)||(28992641-28992746)
chr4 (25-103)||(45549175-45549253)
chr4 (46-112)||(55693114-55693180)
chr4 (7-112)||(15024676-15024781)
chr4 (60-104)||(38476309-38476353)
chr4 (75-110)||(13919815-13919850)
chr4 (49-112)||(44516096-44516159)
[»] chr2 (10 HSPs)
chr2 (7-112)||(9548465-9548569)
chr2 (7-112)||(9032695-9032800)
chr2 (1-110)||(7315345-7315456)
chr2 (7-112)||(19494733-19494838)
chr2 (22-112)||(38935030-38935121)
chr2 (54-112)||(5732560-5732618)
chr2 (54-112)||(5803078-5803136)
chr2 (46-112)||(6190206-6190272)
chr2 (18-112)||(25322810-25322904)
chr2 (60-112)||(840329-840381)
[»] chr6 (8 HSPs)
chr6 (18-112)||(521164-521258)
chr6 (1-112)||(13185450-13185560)
chr6 (1-112)||(32183776-32183887)
chr6 (1-112)||(15135025-15135137)
chr6 (1-89)||(15489400-15489488)
chr6 (46-112)||(20969794-20969860)
chr6 (7-111)||(15611479-15611586)
chr6 (1-109)||(21208156-21208264)
[»] scaffold1940 (1 HSPs)
scaffold1940 (1-112)||(550-661)
[»] chr5 (5 HSPs)
chr5 (46-112)||(9622408-9622474)
chr5 (61-112)||(19279430-19279481)
chr5 (1-112)||(23418862-23418973)
chr5 (46-104)||(43100972-43101030)
chr5 (84-112)||(39628973-39629001)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-112)||(428286-428396)
[»] chr8 (5 HSPs)
chr8 (1-112)||(8845558-8845669)
chr8 (66-111)||(40216356-40216401)
chr8 (1-112)||(41407197-41407308)
chr8 (20-112)||(6148437-6148528)
chr8 (1-112)||(7186187-7186298)
[»] chr7 (12 HSPs)
chr7 (2-92)||(965253-965343)
chr7 (46-112)||(12287081-12287147)
chr7 (46-110)||(16706700-16706763)
chr7 (46-110)||(17680936-17680999)
chr7 (48-110)||(18273474-18273536)
chr7 (1-110)||(35015876-35015985)
chr7 (46-112)||(1910966-1911031)
chr7 (46-112)||(26576159-26576225)
chr7 (66-104)||(47066133-47066171)
chr7 (67-112)||(41853369-41853414)
chr7 (75-112)||(41966511-41966548)
chr7 (46-110)||(35016079-35016143)
[»] scaffold0281 (1 HSPs)
scaffold0281 (60-112)||(22281-22333)
[»] chr1 (11 HSPs)
chr1 (36-112)||(33016377-33016453)
chr1 (34-110)||(47024310-47024386)
chr1 (60-111)||(25389758-25389809)
chr1 (1-112)||(29700953-29701064)
chr1 (47-106)||(43728648-43728707)
chr1 (60-112)||(48379475-48379527)
chr1 (48-112)||(14624970-14625034)
chr1 (1-112)||(8259455-8259566)
chr1 (46-108)||(20381253-20381315)
chr1 (66-111)||(15342908-15342953)
chr1 (21-89)||(4085533-4085601)
[»] scaffold0069 (1 HSPs)
scaffold0069 (46-108)||(61042-61104)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 19332185 - 19332599
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19332185 agggttcttccatagctacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccgc 19332284  T
Q  101 cattgtggatgggtctaacgctatttttgagcctccaaacataattacaaaatatagttgtttgcaaattgatagatattcgatatcaatgagatgtaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19332285 cattgtggatgggtctaacgctatttttgagcctccaaacataattacaaaatatagttgtttgcaaattgatagatattcgatatcaatgagatgtaga 19332384  T
Q  201 aactattggcattacataaatagcaatgttagaaacaaattgatagatattagatggcattgaaatgtagaaataaattgatcatttacggcagtcaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19332385 aactattggcattacataaatagcaatgttagaaacaaattgatagatattagatagcattgaaatgtagaaataaattgatcatttacggcagtcaatg 19332484  T
Q  301 taccatttgttggcaatacaaaactgcaaatatcatgctctc--nnnnnnnnncggcaaatatcatgtcattaaaaaatgttataataatggtaaagtta 398  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  19332485 taccatttgttggcaatacaaaactgcaaatatcatgctctcaaaaaaaaaaacggcaaatatcatgtcattaaaaaatgttataataatggtaaagtta 19332584  T
Q  399 acatgtgatgtaact 413  Q
    |||||||||||||||    
T  19332585 acatgtgatgtaact 19332599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 120 - 337
Target Start/End: Original strand, 19373880 - 19374098
Alignment:
Q  120 gctatttttgagcctccaaacataattacaaaatatagttgtttgcaaattgatagatattcgatatcaatgagatgtagaaactattggcattacataa 219  Q
    |||||| |||||| |||||| |||||||||  ||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||||    
T  19373880 gctattcttgagcttccaaatataattacatgatatagttgtttgcaaattgatagatattagatagcattgagatgtagaaactataggcattacataa 19373979  T
Q  220 atagcaatgttagaaa-caaattgatagatattagatggcattgaaatgtagaaataaattgatcatttacggcagtcaatgtaccatttgttggcaata 318  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19373980 atagcaatgttagaaaacaaattgatagatattagatagcattgaaatgtagaaacaaattgatcatttacggcagtcaatgtaccatttgtttgcaata 19374079  T
Q  319 caaaactgcaaatatcatg 337  Q
    || |||| |||||||||||    
T  19374080 cagaactacaaatatcatg 19374098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 165 - 337
Target Start/End: Original strand, 19398150 - 19398318
Alignment:
Q  165 caaattgatagatattcgatatcaatgagatgtagaaactattggcattacataaatagcaatgttagaaacaaattgatagatattagatggcattgaa 264  Q
    |||||||||||||||| |||| || ||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  19398150 caaattgatagatattagatagcattgagatgaagagactataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaa 19398249  T
Q  265 atgtagaaataaattgatcatttacggcagtcaatgtaccatttgttggcaatacaaaactgcaaatatcatg 337  Q
    ||||||||| |||||||||||||||    ||||| |||||||||||| |||||||| |||| |||||||||||    
T  19398250 atgtagaaacaaattgatcatttac----gtcaaagtaccatttgtttgcaatacataactacaaatatcatg 19398318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26952525 - 26952634
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||| || ||| |||||||  | ||| ||| | ||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||    
T  26952525 agggtgcttccatagtcactcttgtccataggcacccaaatattatactccacaatggaggtgtctatttaatatggtgctaaataggtgaagcacccac 26952624  T
Q  101 cattgtggat 110  Q
    ||||||||||    
T  26952625 cattgtggat 26952634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 18090425 - 18090365
Alignment:
Q  52 acaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||| |||||| |||||||| |||||||||||||| | ||||||||||||||||||||||    
T  18090425 acaatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtggatgg 18090365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29078892 - 29079002
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||||||||||||||| | |||| ||  |||||||||||| | |||  |||||||| |||||| |||||||||||||||  ||     
T  29078892 agggtgcttccatagccacccttctccatagacacccatgtatattactccacaatgg-ggtacctatttaatgtggtgttaaataggttaagcactcat 29078990  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  29078991 cattgtggatgg 29079002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 37333241 - 37333177
Alignment:
Q  46 tactccacaatagagg-tgtctatttaacgtggtgctaaataggttaagcatccaccattgtggat 110  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  37333241 tactccacaat-gaggatgtctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 37333177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 20936143 - 20936253
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||||||||||||||  | | |||||  |||||||||||| | |||  |||||||| |||||  ||||||| |||||||||||     
T  20936143 agggtgcttccatagccacccttctccataggcacctatatatattactccacaatgg-ggtacctatttaaagtggtattaaatagattaagcatccat 20936241  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  20936242 cattgtggatgg 20936253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 19374088 - 19374145
Alignment:
Q  355 caaatatcatgtcattaaaaaatgttataataatggtaaagttaacatgtgatgtaact 413  Q
    ||||||||||||| |||||| ||||||| |||||||| |||||||||| ||||||||||    
T  19374088 caaatatcatgtctttaaaa-atgttatcataatggtcaagttaacatatgatgtaact 19374145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 19554917 - 19555021
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||| ||||| ||| ||| | ||||||||| | |||||||||||||   || ||||||||  | ||| ||||||||  ||||||||||||||||    
T  19554917 cttccatagtcaccctcctctata-acatccatatattatactccacaataggaatgcctatttaatatagtggtaaataggagaagcatccaccattgt 19555015  T
Q  107 ggatgg 112  Q
    ||||||    
T  19555016 ggatgg 19555021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 26919376 - 26919451
Alignment:
Q  36 ccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatg 111  Q
    ||||||| | ||||| ||||| | ||||  |||||||  |||||||||||| || |||||||||||||||||||||    
T  26919376 ccatatattatactctacaatgggggtgcttatttaatatggtgctaaatatgtgaagcatccaccattgtggatg 26919451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36755224 - 36755113
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||||||||||||||  | ||||||| | ||||||||||| |||||||||||||||  ||||||||||||| | ||||| ||||    
T  36755224 agggtgcttccatagccacccttctccatagccacccatatattatactccacaatggaggtgtctatttaatatggtgctaaatagatgaagcacccac 36755125  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  36755124 cattgtggatgg 36755113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 13205684 - 13205769
Alignment:
Q  27 catagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||| | ||||||| |||||| |||||| ||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  13205684 catagacacccatatattttacttcacaatggagatgtctatttaatgtggtactaaataggttaagcacccaccattgtggatgg 13205769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36284660 - 36284754
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaa--cgtggtgctaaataggttaag 93  Q
    ||||| |||||||||  ||||||||||||||||| ||||||  ||||||||||||| |||||| ||||||||   ||||||||||||||||||||    
T  36284660 agggtgcttccataggcacccttctccatagatacccatatgttttactccacaatggaggtgcctatttaatgtgtggtgctaaataggttaag 36284754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 46433205 - 46433315
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| ||||||||| |||||||||||||||  | |||||||  || ||||||||| | |||  |||||||| |||||||||||||||||||||| |||     
T  46433205 agggtgcttccatagctacccttctccataggcacccatatatattgctccacaatgg-ggtacctatttaaagtggtgctaaataggttaagcacccat 46433303  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  46433304 cattgtggatgg 46433315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 56192326 - 56192216
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| ||| |||||  ||||||||| ||||| | ||||||| ||||||||||||  | |||| |||||||| |||||| ||||||||| ||||| ||||    
T  56192326 agggtgctttcatagccacccttctctatagacacccatatattttactccacaacgggggtgcctatttaatgtggtgttaaataggtaaagcacccac 56192227  T
Q  101 cattgtggatg 111  Q
    |||||||||||    
T  56192226 cattgtggatg 56192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 16529936 - 16529831
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||  ||| ||||||||||  | |||| || | ||||||||||| | |||| |||||||| |||||||||||||||| ||||| ||||||||||    
T  16529936 cttccatagccaccattctccatagccacccatgtattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgt 16529837  T
Q  107 ggatgg 112  Q
    ||||||    
T  16529836 ggatgg 16529831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 12832454 - 12832520
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||||| |||| | |||||| |||||||||||||||| ||||| |||||||||| |||||    
T  12832454 tactccacaataggggtgccgatttaatgtggtgctaaataggtgaagcacccaccattgtagatgg 12832520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 37996982 - 37996906
Alignment:
Q  36 ccatatactttactccacaatagagg-tgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||| | ||||||||||| |||| ||||||||||| ||||||||||||||   ||||||||||||||||||||||    
T  37996982 ccatatattatactccacaat-gaggatgtctatttaatgtggtgctaaatagaagaagcatccaccattgtggatgg 37996906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 28992641 - 28992746
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||| |||||||||| || | |  || ||| | ||||||||||| | ||||||||||||   ||||||||||||||| ||||| |||| |||||    
T  28992641 cttccatagtcacccttctccgtacacactcaaatattatactccacaatgg-ggtgtctatttagtatggtgctaaataggtgaagcacccacaattgt 28992739  T
Q  107 ggatggg 113  Q
    |||||||    
T  28992740 ggatggg 28992746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 45549175 - 45549253
Alignment:
Q  25 tccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccat 103  Q
    |||||||| | ||||||| | | ||| ||||| ||||||||||||||| |||||||||||||||| || || |||||||    
T  45549175 tccatagacacccatatattattctctacaatggaggtgtctatttaatgtggtgctaaataggtgaaacacccaccat 45549253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 55693114 - 55693180
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||||||||  || || |||||||| |||||||||||||| | ||||||||| ||||||||||||    
T  55693114 tactccacaatgaagatgcctatttaatgtggtgctaaatagatgaagcatccatcattgtggatgg 55693180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 15024676 - 15024781
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||  ||||||||| | ||| ||| | ||| | ||||||| ||| |||||| ||||||||  || |||||||||||| |||||||||| ||| |    
T  15024676 cttccatagccacccttctctagagacatcaaaatattatactccataatggaggtgcctatttaatatgatgctaaataggtgaagcatccactattat 15024775  T
Q  107 ggatgg 112  Q
    ||||||    
T  15024776 ggatgg 15024781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 38476309 - 38476353
Alignment:
Q  60 ggtgtctatttaacgtggtgctaaataggttaagcatccaccatt 104  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  38476309 ggtgtctatttaatgtggtgctaaataggtgaagcacccaccatt 38476353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 13919850 - 13919815
Alignment:
Q  75 tggtgctaaataggttaagcatccaccattgtggat 110  Q
    |||||||||||||||||| |||||||||||||||||    
T  13919850 tggtgctaaataggttaaacatccaccattgtggat 13919815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 44516096 - 44516159
Alignment:
Q  49 tccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||| || ||||| ||||||| |||||||||||||||| |||||| || |||| |||||||    
T  44516096 tccacaacaggggtgtttatttaatgtggtgctaaataggtgaagcattcatcattttggatgg 44516159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 9548569 - 9548465
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||  |||||||| |||||  |  |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9548569 cttccatagccacccttcttcataggcactcatatagtttactccacaatgg-ggtgtctatttaatgtggtgctaaataggttaagcatccaccattgt 9548471  T
Q  107 ggatgg 112  Q
     |||||    
T  9548470 agatgg 9548465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 9032695 - 9032800
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||  ||||||||||||||  | |||| || | ||||||| |||||||||| |||||||| |||||| ||||||||| ||||| |||||||| |    
T  9032695 cttccatagccacccttctccatagccacccatgtattatactccataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccaccatttt 9032794  T
Q  107 ggatgg 112  Q
    ||||||    
T  9032795 ggatgg 9032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7315345 - 7315456
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaata--ggttaagcatcc 98  Q
    ||||| |||||||||| ||||||||||||||  | |||| || | |||||||||||   |||||||||||||| ||||||||||||   || ||||| ||    
T  7315345 agggtgcttccatagtcacccttctccatagccacccatgtattatactccacaatgagggtgtctatttaacatggtgctaaatatgtgtgaagcaccc 7315444  T
Q  99 accattgtggat 110  Q
    ||||||||||||    
T  7315445 accattgtggat 7315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 19494838 - 19494733
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||  ||| ||||||||||  | ||||||| | ||||||||||| | |||| ||||||||  |||| |||||||| | ||||||||| ||||||    
T  19494838 cttccatagccaccattctccatagtcacccatatattatactccacaatgggggtgcctatttaatatggtactaaatagatgaagcatccatcattgt 19494739  T
Q  107 ggatgg 112  Q
    ||||||    
T  19494738 ggatgg 19494733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 38935121 - 38935030
Alignment:
Q  22 ttctccatagatatccatatactttactccacaat-agaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||| |||| | ||||||| | ||||||||||| || ||||| ||||||| ||||||||||||| || ||||||||| |  |||||||||    
T  38935121 ttctccctagacacccatatattatactccacaatgaggggtgtttatttaatgtggtgctaaatatgtgaagcatccatcgatgtggatgg 38935030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 5732618 - 5732560
Alignment:
Q  54 aatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| ||||| |||||||| |||||||||||||||||||||| |||  ||| |||||||    
T  5732618 aataaaggtgcctatttaatgtggtgctaaataggttaagcacccattattatggatgg 5732560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 5803136 - 5803078
Alignment:
Q  54 aatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| ||||| |||||||| |||||||||||||||||||||| |||  ||| |||||||    
T  5803136 aataaaggtgcctatttaatgtggtgctaaataggttaagcacccattattatggatgg 5803078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 6190206 - 6190272
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| |||||| | |||||||||||||  || ||||||| |||| ||||| ||||||||||||||||    
T  6190206 tacttcacaatgggggtgtctatttaatatgatgctaaacaggtgaagcacccaccattgtggatgg 6190272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 25322904 - 25322810
Alignment:
Q  18 acccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||||||  ||| || || | ||||| |||||   |||| |||||||| |||||| |||||||||||| |||||| |||| |||||||    
T  25322904 acccttctccatagccatcgatgtattatactctacaatgagggtgcctatttaatgtggtgttaaataggttaaacatccatcattatggatgg 25322810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 840329 - 840381
Alignment:
Q  60 ggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| |||||||| |||||||||| ||||| ||||| ||||||||||| ||||    
T  840329 ggtgcctatttaatgtggtgctaagtaggtgaagcacccaccattgtgaatgg 840381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 521258 - 521164
Alignment:
Q  18 acccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||||| |||||| |  |||||| ||||||||||||| ||| ||  ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  521258 acccttcttcatagacactcatatattttactccacaatggagatgcttatttaatgtggtgctaaataggttaagcatgcaccattgtggatgg 521164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 13185560 - 13185450
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    |||||||||||||||| |||||||||||  |  | ||||||| ||||||||||||||| | || |||||||| | |||||||| ||||||| || |||||    
T  13185560 agggttcttccatagtcacccttctccaatggcacccatatattttactccacaatag-gatgcctatttaatgcggtgctaagtaggttatgcttccac 13185462  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  13185461 cattgtggatgg 13185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 32183887 - 32183776
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||| ||||||||||  | ||||||| | ||||||||||| | |||| ||||||||  || |||||||||| | ||||| ||||    
T  32183887 agggtgcttccatagccaccgttctccatagccacccatatattatactccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacccac 32183788  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  32183787 cattgtggatgg 32183776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15135025 - 15135137
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagagg-tgtctatttaacgtggtgctaaataggttaagcatcca 99  Q
    ||||| |||||||||  ||||||||||||||  | |||| || | ||||||||||| |||| || |||||||| |||||||||||||||| ||| | ||     
T  15135025 agggtgcttccatagccacccttctccatagccacccatgtattatactccacaatggagggtgcctatttaatgtggtgctaaataggtgaagtaccct 15135124  T
Q  100 ccattgtggatgg 112  Q
    ||||||| |||||    
T  15135125 ccattgttgatgg 15135137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15489488 - 15489400
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggt 89  Q
    ||||| |||||||||  ||  ||||||||||| | ||| ||| | ||||||||||| | |||| |||||||| ||||||||||||||||    
T  15489488 agggtgcttccatagccacttttctccatagacacccaaatattatactccacaatgggggtgcctatttaatgtggtgctaaataggt 15489400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 20969794 - 20969860
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| |||||| | |||| ||| |||| |||||||||||||||| ||| | ||||||||||||||||    
T  20969794 tacttcacaatgggggtgcctacttaatgtggtgctaaataggtgaagtacccaccattgtggatgg 20969860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 15611586 - 15611479
Alignment:
Q  7 cttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtg---gtgctaaataggttaagcatccaccat 103  Q
    |||||||||| ||| ||||||| ||| | |||| || ||||||||||||||  | ||| ||||||| |||   ||| ||||||| |||||||||||| ||    
T  15611586 cttccatagtcacctttctccacagacaaccatgtattttactccacaataaggatgtttatttaatgtggtagtgttaaatagattaagcatccactat 15611487  T
Q  104 tgtggatg 111  Q
    | ||||||    
T  15611486 tatggatg 15611479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 21208264 - 21208156
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  || |||||||||||  | ||||||| | | ||||||||||  |||| ||||||||   |||| ||||||||| |||||  |||    
T  21208264 agggtgcttccatagccactcttctccatagccacccatatattattctccacaataagggtgcctatttaatacggtgttaaataggtgaagcacacac 21208165  T
Q  101 cattgtgga 109  Q
    |||||||||    
T  21208164 cattgtgga 21208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 661 - 550
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||||||||||||||  | ||||||| | | ||||||||| | |||| |||||||| |||||| ||||||||| |||||| |||    
T  661 agggtgcttccatagccacccttctccatagccacccatatattattctccacaatgggggtgcctatttaatgtggtgttaaataggtgaagcattcac 562  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  561 cattgtggatgg 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 9622408 - 9622474
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||| | ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  9622408 tactccacaatgggggtgtctatttaatgtggtgctaaataggtgaagcacccaccattgtggatgg 9622474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 19279481 - 19279430
Alignment:
Q  61 gtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||||||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  19279481 gtgtctatttaatgtgatgctaaataggtgaagcacccaccattgtggatgg 19279430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23418973 - 23418862
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||| ||||||||||  | ||||||| | ||||||||||| | |||| ||||||||   |||| ||||||| | ||||| |||     
T  23418973 agggtgcttccatagccaccattctccatagccacccatatattatactccacaatgggggtgcctatttaatacggtgttaaatagatgaagcacccat 23418874  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  23418873 cattgtggatgg 23418862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 43100972 - 43101030
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccatt 104  Q
    |||||||||||   ||||  ||||||| |||||||||||||||||||||| ||||||||    
T  43100972 tactccacaatgagggtgcttatttaatgtggtgctaaataggttaagcacccaccatt 43101030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 39628973 - 39629001
Alignment:
Q  84 ataggttaagcatccaccattgtggatgg 112  Q
    |||||||||||||||||||||||||||||    
T  39628973 ataggttaagcatccaccattgtggatgg 39629001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 428396 - 428286
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||||||||||||||  | |||| || | ||||||||||| | |||| ||||||||  ||||||||||||||| ||||| ||||    
T  428396 agggtgcttccatagccacccttctccatagccacccatgtattatactccacaatgg-ggtgcctatttaatctggtgctaaataggtgaagcacccac 428298  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  428297 cattgtggatgg 428286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 8845669 - 8845558
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||||| |||||||   | ||||||  | ||||||||||| || ||| |||||||| |||||||||||||||| ||||| ||||    
T  8845669 agggtgcttccatagccaccctcctccataagcacccatatgttatactccacaatggaagtgcctatttaatgtggtgctaaataggtaaagcacccac 8845570  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  8845569 cattgtggatgg 8845558  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 40216401 - 40216356
Alignment:
Q  66 tatttaacgtggtgctaaataggttaagcatccaccattgtggatg 111  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||    
T  40216401 tatttaatgtggtgctaaataggtgaagcatccaccatcgtggatg 40216356  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 41407308 - 41407197
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||| ||||| ||||  | ||||||| |||||||||||||   |||| ||||||||  ||||| ||||||| | ||||| |||     
T  41407308 agggtgcttccatagccaccattctctatagccacccatatattttactccacaatgatggtgcctatttaatatggtgttaaatagatgaagcacccat 41407209  T
Q  101 cattgtggatgg 112  Q
    ||||||||||||    
T  41407208 cattgtggatgg 41407197  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 6148437 - 6148528
Alignment:
Q  20 ccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||||| | ||||||| | |||| |||||| ||| ||  |||| ||  ||||| ||||||||| ||||| ||||||||||||||||    
T  6148437 ccttctccatagacacccatatattatacttcacaatggagatgcttatt-aatatggtgttaaataggtgaagcacccaccattgtggatgg 6148528  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 7186298 - 7186187
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagag-gtgtctatttaacgtggtgctaaataggttaagcatcca 99  Q
    ||||| |||||||||  ||||||||||||||  | ||||||| | | ||||||||| ||| ||| ||||||||   ||||||||||| || ||||| |||    
T  7186298 agggtgcttccatagccacccttctccatagccacccatatattattctccacaat-gagagtgcctatttaatacggtgctaaatatgtgaagcaccca 7186200  T
Q  100 ccattgtggatgg 112  Q
    |||||||| ||||    
T  7186199 ccattgtgtatgg 7186187  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 965343 - 965253
Alignment:
Q  2 gggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaa 92  Q
    |||| |||||||||| ||  ||||||||||| | ||||||| ||||||||||||| | |||| |||||||| ||||||||||||| |||||    
T  965343 gggtgcttccatagtcactattctccatagacacccatatattttactccacaatgggggtgcctatttaatgtggtgctaaatatgttaa 965253  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 12287147 - 12287081
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||| |||||| |||||||| |||||| ||||||||| ||||| ||||||||| ||||||    
T  12287147 tactccacaatggaggtgcctatttaatgtggtgttaaataggtaaagcacccaccattgaggatgg 12287081  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 16706700 - 16706763
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggat 110  Q
    ||||||||||| | |||| |||||||| |||||||||||||||| ||||| ||||||||||||||    
T  16706700 tactccacaatgg-ggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 16706763  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 17680936 - 17680999
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggat 110  Q
    ||||||||||| | |||| |||||||| |||||||||||||||| ||||| ||||||||||||||    
T  17680936 tactccacaatgg-ggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 17680999  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 18273474 - 18273536
Alignment:
Q  48 ctccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggat 110  Q
    ||||||||| | ||||| ||||||   ||||||||||||||| ||||||||||||||||||||    
T  18273474 ctccacaatgggggtgtttatttattatggtgctaaataggtgaagcatccaccattgtggat 18273536  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35015876 - 35015985
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| |||||||||  ||| ||||| ||||  ||||||||| | |||||||||||   |||| ||||||||  ||||||||||||| | || || ||||    
T  35015876 agggtgcttccatagccaccattctctatagccatccatatattatactccacaatgagggtgcctatttaatatggtgctaaatagatgaaacacccac 35015975  T
Q  101 cattgtggat 110  Q
    ||||||||||    
T  35015976 cattgtggat 35015985  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 1911031 - 1910966
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| |||||||| |||||||||||||  | ||||||||||||| ||||| |||||||| |||||||    
T  1911031 tacttcacaatag-ggtgtctatttaatatagtgctaaataggtgaagcacccaccattatggatgg 1910966  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 26576159 - 26576225
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||||||||||||||||||| ||||  || |||||||||||| || || | ||||| ||||||||    
T  26576159 tactccacaatagaggtgtctaattaatatgatgctaaataggtgaaacaccaaccatcgtggatgg 26576225  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 47066133 - 47066171
Alignment:
Q  66 tatttaacgtggtgctaaataggttaagcatccaccatt 104  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  47066133 tatttaatgtggtgttaaataggttaagcatccaccatt 47066171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 41853369 - 41853414
Alignment:
Q  67 atttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||| |||||||||||||| | ||||||||| ||||||||||||    
T  41853369 atttaatgtggtgctaaatagatgaagcatccatcattgtggatgg 41853414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 41966511 - 41966548
Alignment:
Q  75 tggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  41966511 tggtgctaaatagattaagcatccaccattgtagatgg 41966548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 35016079 - 35016143
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggat 110  Q
    |||||||||||   |||| ||||||||  ||||||||||||| | ||||| ||||||||||||||    
T  35016079 tactccacaatgagggtgcctatttaatatggtgctaaatagatgaagcacccaccattgtggat 35016143  T

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Target: scaffold0281 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 22281 - 22333
Alignment:
Q  60 ggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  22281 ggtgtctatttaatgtggtgttaaataggtgaagcatccaccattgtggatgg 22333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 33016453 - 33016377
Alignment:
Q  36 ccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    ||||||| ||||||||| ||| |||||| |||||||| ||||||||||||| |||||||| | |||||||| |||||    
T  33016453 ccatatattttactccaaaatggaggtgcctatttaatgtggtgctaaataagttaagcacctaccattgtagatgg 33016377  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 47024386 - 47024310
Alignment:
Q  34 atccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggat 110  Q
    ||||||||| ||||||||||||| |||||| |||||||| ||||||  |||||| ||| ||| ||||||||||||||    
T  47024386 atccatatattttactccacaatggaggtgcctatttaatgtggtgtgaaatagattacgcacccaccattgtggat 47024310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 25389758 - 25389809
Alignment:
Q  60 ggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatg 111  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  25389758 ggtgtctatttaatgtggtgctaaataggttaagcacccaccattgttgatg 25389809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 29701064 - 29700953
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| ||| |||||  ||||||||||||| | | ||||||| ||| ||||||| | | |||| ||||||||  | ||||||||||||||||||| ||||    
T  29701064 agggtactttcatagccacccttctccatatacacccatatattttgctccacagtgggggtgcctatttaatattgtgctaaataggttaagcacccac 29700965  T
Q  101 cattgtggatgg 112  Q
    |||| |||||||    
T  29700964 cattctggatgg 29700953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 43728648 - 43728707
Alignment:
Q  47 actccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgt 106  Q
    |||||||||| |||||| |||||||| |||||||||||||| | ||||||||||||||||    
T  43728648 actccacaatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgt 43728707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 48379527 - 48379475
Alignment:
Q  60 ggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||| |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  48379527 ggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggatgg 48379475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 14625034 - 14624970
Alignment:
Q  48 ctccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtggatgg 112  Q
    |||||||||||  ||| || ||||| |||||||||||||||| ||||| |||||||||| |||||    
T  14625034 ctccacaataggagtgcctctttaatgtggtgctaaataggtgaagcacccaccattgtagatgg 14624970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8259455 - 8259566
Alignment:
Q  1 agggttcttccatagttacccttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccac 100  Q
    ||||| ||||||||   ||||||||||||||  | ||||||| | ||| ||||||| | |||| ||||||||  || |||||||||| | ||||| ||||    
T  8259455 agggtgcttccataaccacccttctccatagccacccatatattataccccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacccac 8259554  T
Q  101 cattgtggatgg 112  Q
    |||||| |||||    
T  8259555 cattgtagatgg 8259566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 20381253 - 20381315
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtgg 108  Q
    ||||||||||| |  ||| ||||||||  ||||||||||||||| || |||||||||||||||    
T  20381253 tactccacaatgggagtgcctatttaatatggtgctaaataggtgaaacatccaccattgtgg 20381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 15342908 - 15342953
Alignment:
Q  66 tatttaacgtggtgctaaataggttaagcatccaccattgtggatg 111  Q
    ||||||| |||||||||||||||| ||||| |||||||||| ||||    
T  15342908 tatttaatgtggtgctaaataggtgaagcacccaccattgtagatg 15342953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 4085601 - 4085533
Alignment:
Q  21 cttctccatagatatccatatactttactccacaatagaggtgtctatttaacgtggtgctaaataggt 89  Q
    |||||||||||| | ||||||| ||||||||| ||| |||||   ||||||| |||||||| |||||||    
T  4085601 cttctccatagacacccatatattttactccataatggaggttcatatttaatgtggtgctcaataggt 4085533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 61042 - 61104
Alignment:
Q  46 tactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccaccattgtgg 108  Q
    ||||||||||| |  ||| ||||||||  ||||||||||||||| || |||||||||||||||    
T  61042 tactccacaatgggagtgcctatttaatatggtgctaaataggtgaaacatccaccattgtgg 61104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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