View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19704_low_7 (Length: 409)
Name: NF19704_low_7
Description: NF19704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19704_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 44102732 - 44102341
Alignment:
| Q |
6 |
gtgttttactgatggttatcaaattggttaattgtaactcnnnnnnncaattttattatgtacaaaatacattactttactggtgagtggtgactggttt |
105 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44102732 |
gtgttttgctgatggttatcaaattggttaattgtaactcaaaaaaaaaaaattattatgtacaaaatacattactttactggtgagtggtgactggttt |
44102633 |
T |
|
| Q |
106 |
ctaacatatgctcatctccattttgcttaacaaacattgttgtagcagcaccgatcaagctacaaccggtgatgtaaattccccttcaaccattacataa |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44102632 |
ctaacatatgctcatctccattttgcttaacaaacactgttgtagcagcaccgatcaagctacaactggtgatgtaaattccccttcaaccattacataa |
44102533 |
T |
|
| Q |
206 |
acaacaaattcagaataacggagagaaaatgagagagaatttgatttgaaagggaaaaatgagaaaaaggggttaccaagcagcgccgagacaccgattg |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44102532 |
acaacaaattcagaataacggagagaaaatgagagagaatttgatttgaaaggggaaaatgagaaaaaggggttaccaagcagcgccgagacagcgattg |
44102433 |
T |
|
| Q |
306 |
cggcaaaggtgtatggtgagatcctaacgagtgctgcaacctaagagcttgaatgcctacaatgattacagagctagacatggtggttgttg |
397 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44102432 |
cagcaaaggtgtctggtgagatcctaacgagtgctgcaacctaagagcttgaatgcctacaatgattacagagctagacatggtggttgttg |
44102341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 2292966 - 2292555
Alignment:
| Q |
6 |
gtgttttactgatggttatcaaattggttaattgtaactcnnnnnnncaattttattatgtacaaaatacattactttactggtgagtggtgactggttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2292966 |
gtgttttactgatggttatcaaattggttaattgtaactcaaaaaaacaatttcattatgtacaaaatacattactttactggtgagtggtgactggttt |
2292867 |
T |
|
| Q |
106 |
ctaacatatgctcatctccattttgcttaacaaacattgttgtagcagcaccgatcaagctacaaccggtgatgtaaattccccttcaaccattacataa |
205 |
Q |
| |
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|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2292866 |
ctaacatatgattatctccattttgcttaacaagcattgttgtagcagcaccgatcaagctacaaccggcgatgtaaattccccttcaaccattacataa |
2292767 |
T |
|
| Q |
206 |
acaacaaattcagaataacggagagaaaatgagagagaatttgatttgaaagggaaaaatgaga-aaaaggggttaccaagcagcgccgagacac----- |
299 |
Q |
| |
|
|||||| ||| |||||||| ||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |
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| T |
2292766 |
acaacagatttagaataactgagagaaaacgagacagaatttgatttgaaaggggaaaatgagaaaaaaggggttatcaagcagcgccgagacacagatt |
2292667 |
T |
|
| Q |
300 |
-------------cgattgcggcaaaggtgtatggtgagatcctaacgagtgctgcaacctaagagcttgaatgc-ctacaatgattacagagctagaca |
385 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| | || |||||||| |||||||||||| |
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| T |
2292666 |
gaaacggcgatatcgattgcggcaaaggtgtatgatgagaccctaacgagtgctgcaacacaagagcttgaattcgctgcaatgattgcagagctagaca |
2292567 |
T |
|
| Q |
386 |
tggtggttgttg |
397 |
Q |
| |
|
|||||||||||| |
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|
| T |
2292566 |
tggtggttgttg |
2292555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 51218413 - 51218003
Alignment:
| Q |
6 |
gtgttttactgatggttatcaaattggttaattgtaactcnnnnnnncaattttattatgtacaaaatacattactttactggtgagtggtgactggttt |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51218413 |
gtgttttaccgatggttatcaaattggttaattgtaactcaaaaaaacaatttcattctgtgcaaaatacattactttactggtgagtggtgactggttt |
51218314 |
T |
|
| Q |
106 |
ctaacatatgctcatctccattttgcttaacaaacattgttgtagcagcaccgatcaagctacaaccggtgatgtaaattccccttcaaccattacataa |
205 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
51218313 |
ctaacatatgcttttctccatttttcttaacaagcattgttgtagcagccccggttaagctacaaccggcgatgtaaattccccttcaaccattacataa |
51218214 |
T |
|
| Q |
206 |
acaacaaattcagaataacggagagaaaatgagagagaatttgatttgaaagggaaaaatgagaaaaaggggttaccaagcagcgccgagacac------ |
299 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
51218213 |
acaacagattcaaaataacggagaaaaaacgagagagaatttgatttgaaaggggaaaatgagaaaaaggggttatcaagcagcgccgagacacagattg |
51218114 |
T |
|
| Q |
300 |
------------cgattgcggcaaaggtgtatggtgagatcctaacgagtgctgcaacctaagagcttgaatgc-ctacaatgattacagagctagacat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||| ||||||||||||| |
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| T |
51218113 |
aaacggaaatatcgattgcggcaaaggtgtatggtgagatcctaacgagtgctgcagcacaagagcttgaatgcgctgcaatgattgcagagctagacat |
51218014 |
T |
|
| Q |
387 |
ggtggttgttg |
397 |
Q |
| |
|
||||||||||| |
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|
| T |
51218013 |
ggtggttgttg |
51218003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 47016123 - 47016067
Alignment:
| Q |
93 |
tggtgactggtttctaacatatgctcatctccattttgcttaacaaacattgttgta |
149 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||| |||||||| || ||||||| |
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|
| T |
47016123 |
tggttactggtttctaacatgtgcttatctccattttacttaacaagcactgttgta |
47016067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 35528860 - 35528767
Alignment:
| Q |
298 |
accgattgcggcaaaggtgtatggtgagatcctaacgagtgctgcaacctaagagcttgaatgc-ctacaatgattacagagctagacatggtg |
390 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||||| |
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|
| T |
35528860 |
accgattgcggaaaaggtatatggagagatcctaacgagtgctgcagcccaagagcttgaatgcgctgcaatgattgcagagctagacatggtg |
35528767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 35529029 - 35528887
Alignment:
| Q |
148 |
tagcagcaccgatcaagctacaaccggtgatgtaaattccccttcaacc----attacataaacaacaaattcagaataacggagagaaaatgagagaga |
243 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| | | ||||||| |
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|
| T |
35529029 |
tagcagcaccgatcaaactactaccggtgatgtaaattccccttcaagcgacaattacataaacaacagattca--ataaggaa---------agagaga |
35528941 |
T |
|
| Q |
244 |
atttgatttgaaagggaaaaatgag-aaaaaggggttaccaagcagcgccgaga |
296 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35528940 |
atttgatttgaaaggggaaaatgaggaaaaaggggttaccaagcagcgccgaga |
35528887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 26205525 - 26205558
Alignment:
| Q |
122 |
tccattttgcttaacaaacattgttgtagcagca |
155 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
26205525 |
tccattttgcttaacaagcattgttgtagcagca |
26205558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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