View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19705_high_4 (Length: 343)
Name: NF19705_high_4
Description: NF19705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19705_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 38769682 - 38769388
Alignment:
| Q |
1 |
ataaagtactttccgccatttattgtattttgtccaagttaacactgctgacgcggtactggtgggttatttttccgttttgtctatgagtgctcccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38769682 |
ataaagtactttccgccatttattgtattttgtccaagttaacactgctgacgcggtactggtgggttatttttccgttttgtctatgagtgctcccagt |
38769583 |
T |
|
| Q |
101 |
cacacttttttgttttcttcctcttttaaaaaatgcttattaaacaaaaatgcatgggaaattgggaattgctctttggctcccgcatttttgctcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38769582 |
cacacttttttgttttcttcct-------------cttattaaacaaaaatgcatgggaaattgggaattgctctttggctcccgcatttttgctcaaaa |
38769496 |
T |
|
| Q |
201 |
tcggaatatacataatacatacattctgatggcacaaacctatcgnnnnnnnactcaaaatctattgaagctatttttggatcgacatttcttatttatg |
300 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
38769495 |
tcggaat-------atacatacattctgatggtacaaacctatcgtttttttactcaaaatctattgaagctatttttagatcgacatttc----ttatg |
38769407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University