View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19705_low_1 (Length: 497)
Name: NF19705_low_1
Description: NF19705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19705_low_1 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 65610 - 65857
Alignment:
| Q |
1 |
ctattttattccaacaaaggcttttagctacattctcaattttggtttgctcttcattcaagtcttcttctgttctttcccatcctttccaatatttctt |
100 |
Q |
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| T |
65610 |
ctattttattccaacaaaggcttttagctacattctcaattttggtttgctcttcattcaagtcttcttttgttctttcccatcctttccaatatctctt |
65709 |
T |
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| Q |
101 |
ccagcgaattggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttcatttagataaagtccatctaattcaacaaagttaaaa |
200 |
Q |
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| T |
65710 |
ccagtgaattggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttcatttagataaagtccatctaattcaacaaagtaaaaa |
65809 |
T |
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| Q |
201 |
a-caaatcaaacacatgttaatgttgaatcataatgcttcataattta |
247 |
Q |
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| T |
65810 |
accaaatcaaacacatgttaatgttgaatcataatgcttcatacttta |
65857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 289 - 488
Target Start/End: Original strand, 66145 - 66349
Alignment:
| Q |
289 |
tgtgtttcaatgtctgacatacgtgttcgtattcgacactgaaacagcacaaatacatgtaatta-----aattatgacattttcttaactcattgtcaa |
383 |
Q |
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| T |
66145 |
tgtgtttcaatgtctgacatatgtgttcgtattcgacactgaaacagcacaaacacatgtaattacattaaattatgacattttcttaactcattatcga |
66244 |
T |
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| Q |
384 |
tgtcgacgtgtcagtgttgtctggtgtttgctgtgcttcatatgttagaattaatctttatatagtccatatatcaaggaccaaaataatgttacacata |
483 |
Q |
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| T |
66245 |
tgtcgacgtgtcagtgttgtctggtgtttgctgtgcttcatatgttagaattaatctttatatagttcatatttcaaggaccaaaataatgttacacata |
66344 |
T |
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| Q |
484 |
ttctt |
488 |
Q |
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| T |
66345 |
ttctt |
66349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 28639562 - 28639637
Alignment:
| Q |
108 |
attggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttcatttagataaagtccatcta |
183 |
Q |
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| T |
28639562 |
attggtggccctgatagaatccaataccccccaggacgtagcactctatcaacttcagttaaataaattccatcta |
28639637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 45785599 - 45785763
Alignment:
| Q |
6 |
ttattccaacaaaggcttttagctacattctcaattttggtttgctcttcattcaagtcttcttctgttctttcccatcctttccaatatttcttccagc |
105 |
Q |
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| T |
45785599 |
ttattccagcaaagacttttagcaactttttcaattttagtctgctcttgattcaagtcctttttggttctttgccaccctctatggtgtttattccaat |
45785698 |
T |
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| Q |
106 |
gaattggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttcatttaga |
170 |
Q |
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| T |
45785699 |
taattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttaga |
45785763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 12401823 - 12401912
Alignment:
| Q |
75 |
ctttcccatcctttccaatatttcttccagcgaattggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttca |
164 |
Q |
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| T |
12401823 |
ctttcccatcctttccagtgtttctgccagtttattggtggccctgacagaatccagtatccaccaggacgcagtagtctatcaacttca |
12401912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 42399444 - 42399371
Alignment:
| Q |
66 |
tcttctgttctttcccatcctttccaatatttcttccagcgaattggtggaccagatagaatccaatacccacc |
139 |
Q |
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| T |
42399444 |
tcttcagttctttcccagcccctccagtatttcttccatctaataggtgggccagaaagaatccaataaccacc |
42399371 |
T |
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