View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19705_low_2 (Length: 429)
Name: NF19705_low_2
Description: NF19705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19705_low_2 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 28023275 - 28022870
Alignment:
| Q |
18 |
tctttttattgtgatatgttgggagatttggaagatcaaaatgaggagatattttaaaatgtgaaaaaagattcatgggcttcaatctattgcatctgct |
117 |
Q |
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| T |
28023275 |
tctttttattgtgatatgttgggagatttggaagatcaaaatgaggagatattttaaaatgtgaaaaaagattcatgggcttcaatctattgcatctgct |
28023176 |
T |
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| Q |
118 |
cctatcactcttccatggtgcgtgcacttggtcaatctgagaatcgtcgcgtgtctcgacaagtgacatggtacatgtattatcatcatgaattatataa |
217 |
Q |
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| T |
28023175 |
cctataactcttccatggtgcgtgcacttggtcaatctgagaatcgccgcgtgtctcgacaagtgacatggtacatgtattatcatgatgaataatataa |
28023076 |
T |
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| Q |
218 |
ttatcatgaattctttctttnnnnnnnnnttatcatgaattatataattttatgtttttctatgaatttttgttatcaacattactaagattaaaatact |
317 |
Q |
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| T |
28023075 |
ttatcatgaattatttctttaaaaaaaaattatcatgaattatataattttatgtttttctatgaattttggttatcaacattactaagattaaaatact |
28022976 |
T |
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| Q |
318 |
taaattttgttg-nnnnnnnnnnctaaattctttatctaaatttaatttattactttatatgtagaactgaatctaaattgtatatgtataatcttgcct |
416 |
Q |
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| T |
28022975 |
taaattttcttgaaaaaaaaaaactaaattctttatctaaatttaatttattactttatgtgtagaactgaatctaaattgtatatgtataatcttgcct |
28022876 |
T |
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| Q |
417 |
atgcta |
422 |
Q |
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| T |
28022875 |
atgcta |
28022870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 29837169 - 29837341
Alignment:
| Q |
18 |
tctttttattgtgatatgttgggagatttggaagatca-aaatgaggagatattttaaaatgtgaaaaaagattcatgggcttcaatctattgcatctgc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| |
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| T |
29837169 |
tctttttattgtgatatgttgggagatttggaagaacagaaatgaggagatatttcaaaatgtgaaaaaagatgcatgggcttcaatcaattgcatatgc |
29837268 |
T |
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| Q |
117 |
tcctatcactcttccatggtgcgtgcacttggtcaatctgagaatcgtcgcgtgtctcgacaagtgacatggtac |
191 |
Q |
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| T |
29837269 |
tcatatcactcttccatggtgcgtgctcttggtcaatctgagaattgt--catgtctcgacaagtaagatggtac |
29837341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 47695534 - 47695471
Alignment:
| Q |
356 |
aatttaatttattactttatatgtagaactgaatctaaattgtatatgtataatcttgcctatg |
419 |
Q |
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| T |
47695534 |
aatttaatttattagtttatatatagagttgagtctaaatttcatatgtataatattgcctatg |
47695471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 22004 - 21946
Alignment:
| Q |
351 |
atctaaatttaatttattactttatatgtagaactgaatctaaattgtatatgtataat |
409 |
Q |
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| T |
22004 |
atctaaatttaatttattagtttatatgtagaattgaatctaagttttatatgtataat |
21946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 27343837 - 27343779
Alignment:
| Q |
351 |
atctaaatttaatttattactttatatgtagaactgaatctaaattgtatatgtataat |
409 |
Q |
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| T |
27343837 |
atctaaatttaatttattagtttatatgtagaattgaatctaagttttatatgtataat |
27343779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 13238647 - 13238696
Alignment:
| Q |
360 |
taatttattactttatatgtagaactgaatctaaattgtatatgtataat |
409 |
Q |
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| T |
13238647 |
taatttattagtttatatgtagaattgaatctaagttttatatgtataat |
13238696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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