View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19705_low_7 (Length: 271)
Name: NF19705_low_7
Description: NF19705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19705_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 64 - 261
Target Start/End: Complemental strand, 25031883 - 25031686
Alignment:
| Q |
64 |
ggaatgttatgtaacatgtgttttgaaaaaactgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttccatcattgaagat |
163 |
Q |
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| T |
25031883 |
ggaatgttatgtaacatgtgttttgaaaaaactgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttccatcattgaagat |
25031784 |
T |
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| Q |
164 |
gttgaaactcggcgtaggcattgtggaattcgacataggcaacactgtggaattcaacaacatagacactgtggattcattacttgtctttctctctg |
261 |
Q |
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| T |
25031783 |
gttgaaactcggcgcaggcgttgtggaattcgacataggcaacactgtggaattcaacaacatagacactgtggattcattacttgtctttctctctg |
25031686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 24488940 - 24489020
Alignment:
| Q |
94 |
actgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttccatcattgaagatgttgaaactcg |
174 |
Q |
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| T |
24488940 |
actgcagtcttgttggttcagtccatatcaactttcaacattcttcaatttattttccatcattgaagaggttgaaactcg |
24489020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 25031947 - 25031915
Alignment:
| Q |
18 |
ttcatctcttgttctctctctgtttttaacacg |
50 |
Q |
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| T |
25031947 |
ttcatctcttgttctctctctgtttttaacacg |
25031915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 20506480 - 20506524
Alignment:
| Q |
126 |
tttcaaccttcttcaattcatcttccatcattgaagatgttgaaa |
170 |
Q |
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| T |
20506480 |
tttcaaccttctgcgattcattttccatcattaaagatgttgaaa |
20506524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 17772135 - 17772271
Alignment:
| Q |
65 |
gaatgttatgtaacatgtgttttgaaaaaactgcagtcttgttggtgcaattcatataatgtttcaaccttcttcaattcatcttccatcattgaagatg |
164 |
Q |
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|||||||||||||| | | ||||||||| | | ||||||| | ||| |||| ||| | ||| |||||| ||||||| ||||| ||||||| | |||||| |
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| T |
17772135 |
gaatgttatgtaacctatcttttgaaaatattacagtcttatcggttcaatccatgtgatgattcaacattcttcagttcattttccatcgctcaagatg |
17772234 |
T |
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| Q |
165 |
ttgaaactcggcgtaggcattgtggaattcgacatag |
201 |
Q |
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| T |
17772235 |
ttgaaaatcgacccaggcatcgtggaacttgacatag |
17772271 |
T |
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