View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19706_high_6 (Length: 334)
Name: NF19706_high_6
Description: NF19706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19706_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 43417150 - 43416849
Alignment:
| Q |
12 |
aaagggcgtcaacataacattatattgttttttagatgaacttacaaataatatgtaattgagtcgaaaacttgttcttaaagtaaaaaacgcataannn |
111 |
Q |
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| T |
43417150 |
aaagggtgtcaacataacattatattgttttttagatgaacttacaaataatatgtaattgagtcgaaaacttgttctaaaagtaaaaaacgcataattt |
43417051 |
T |
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| Q |
112 |
nnnnngagggaaggagttgaaaatgggaggagcagatagaaaggagtgaaacttgactatgaatcaaa-catgcacgatttccttcctagaataggtata |
210 |
Q |
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| T |
43417050 |
tttt-gagggaaggagttgaaaatgggaggagcagatagaaaggagtgaaacttgactatgaatcaaaacatgcacgatttcct----agaataggtata |
43416956 |
T |
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| Q |
211 |
gataattaatatataatagaatgtcaagttttactcatttctctccacttaattattcagtcttaatatatctctacataatataataacacacacctcc |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416955 |
gataattaata----atagaatgtcaagttttactcatttctctccacttaattattcagtcttaatatatctctacataatataataacacacacctcg |
43416860 |
T |
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| Q |
311 |
aagatagaaat |
321 |
Q |
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||||||||||| |
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| T |
43416859 |
aagatagaaat |
43416849 |
T |
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