View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19706_high_8 (Length: 319)
Name: NF19706_high_8
Description: NF19706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19706_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 9630221 - 9629930
Alignment:
| Q |
15 |
agtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagaagattcctgatactgataagcccagttc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
9630221 |
agtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagtagattcctgatactgataagcccagaac |
9630122 |
T |
|
| Q |
115 |
tgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacgtcgtttcttgaaacatcaagctcataaacttgagtcaaattagcaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9630121 |
tgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacatcgtttcttgaaacatcaagctcataaacttgagtcaaattagctat |
9630022 |
T |
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| Q |
215 |
agaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtttcgaaagaacgccgatgttatcaggtataacaccgg |
306 |
Q |
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| T |
9630021 |
agaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtttcgaaagaacaccgatgttttcaggtataacaccgg |
9629930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 9630109 - 9630138
Alignment:
| Q |
98 |
actgataagcccagttctgggcttatcagt |
127 |
Q |
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| T |
9630109 |
actgataagcccagttctgggcttatcagt |
9630138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 13607025 - 13607316
Alignment:
| Q |
15 |
agtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagaagattcctgatactgataagcccagttc |
114 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| | |
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| T |
13607025 |
agtatagtcaagttttttatgttccctaattcgttaggtaatcgaccgcccaaaaagatatcttggaaaagtagattcctgatactgataagcccagaac |
13607124 |
T |
|
| Q |
115 |
tgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacgtcgtttcttgaaacatcaagctcataaacttgagtcaaattagcaat |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13607125 |
tgggcttatcagtgccatcaggaaacaaacgaaggtctaatataccagaaacatcgtttcatgaaacatcaagctcataaacttgagtcaaattagcaat |
13607224 |
T |
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| Q |
215 |
agaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtttcgaaagaacgccgatgttatcaggtataacaccgg |
306 |
Q |
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| T |
13607225 |
agaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtttcgaaagaacaccgatgttttcaggtataacaccgg |
13607316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 13902980 - 13902689
Alignment:
| Q |
15 |
agtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagaagattcctgatactgataagcccagttc |
114 |
Q |
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|||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||| | |
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| T |
13902980 |
agtacagtcaagttttttatgttccctaattcgttcggtaatcgaccgcccaaaaagttatcttggaaaagtagattcctgatgctgataagcccagaac |
13902881 |
T |
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| Q |
115 |
tgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacgtcgtttcttgaaacatcaagctcataaacttgagtcaaattagcaat |
214 |
Q |
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|| | ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
13902880 |
tgagtttatcagtgccatcaggaaacaaacgatggtctagtataccagatacgtcgtttcgtgaaacatcaagctcataaacttgagtcatattagcaat |
13902781 |
T |
|
| Q |
215 |
agaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagtttcgaaagaacgccgatgttatcaggtataacaccgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||| |
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| T |
13902780 |
agaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattggagttttgaaagaacaccgatgttttcaggtatgacaccgg |
13902689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 13607137 - 13607108
Alignment:
| Q |
98 |
actgataagcccagttctgggcttatcagt |
127 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
13607137 |
actgataagcccagttctgggcttatcagt |
13607108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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