View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19706_low_1 (Length: 606)

Name: NF19706_low_1
Description: NF19706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19706_low_1
NF19706_low_1
[»] chr8 (12 HSPs)
chr8 (5-590)||(31560723-31561308)
chr8 (149-400)||(31558936-31559181)
chr8 (121-344)||(31877529-31877754)
chr8 (5-123)||(31877389-31877503)
chr8 (475-559)||(9838278-9838362)
chr8 (18-123)||(31559304-31559405)
chr8 (147-307)||(31556020-31556173)
chr8 (300-405)||(31555903-31556000)
chr8 (189-248)||(31852320-31852379)
chr8 (36-114)||(31556306-31556384)
chr8 (549-586)||(31558023-31558060)
chr8 (119-184)||(31559210-31559280)


Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 5 - 590
Target Start/End: Complemental strand, 31561308 - 31560723
Alignment:
Q  5 gagtttttcatacagaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagactgattacatcctccaagcca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31561308 gagtttttcatacagaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagaccgattacatcctccaagcca 31561209  T
Q  105 aggtggatgaatccgcaaagtctagaga-tatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagg 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561208 aggtggatgaatccgcaaagtctagagaatatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagg 31561109  T
Q  204 gctgtaactgatattgagtaattgacactgccaaaatccagtaatgacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31561108 gctgtaactgatattgagtaattgacactgccaaaatccagtaatgacggagaaaaaa-aaagcaaggacaaatataattcaagaacagaaagccgattc 31561010  T
Q  304 aattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561009 aattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttg 31560910  T
Q  404 ttcatttccttctccttctatagtactttatattattcgtaaatactttatagtacttttatttaggcccttccttgagattgttcttataaaataacat 503  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  31560909 ttcatttcctactccttctatagtactttatactattcgtaaatactttatagtacttttatttaggcacttccttgagattgttcttataaaatagcat 31560810  T
Q  504 catcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctcactgcctcagaaagcttttctctagaattttc 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31560809 catcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctcactgcctcagaaagcttttctctagaattttc 31560723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 149 - 400
Target Start/End: Complemental strand, 31559181 - 31558936
Alignment:
Q  149 ttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaat 248  Q
    ||||| ||||| ||| ||||||| | ||||||||||||| ||||| |||||||||||||||||||||||| | |||||  ||| ||||||||||||||||    
T  31559181 ttgtagataggctgaggatagatccgcgacagtgaatattgtcttctgttggagggctgtaactgatatttaataatttgcacagccaaaatccagtaat 31559082  T
Q  249 gacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtcc 348  Q
    || || |||||| |||||     |||||||||||||||||| |||| ||| |||||||||||||| |||||||| |||||||||  ||||||||| ||||    
T  31559081 gatggggaaaaa-taaag-----acaaatataattcaagaatagaaggccaattcaattatctacagagatacatttgacataaaatgaaaaatgagtcc 31558988  T
Q  349 taaaaatatatatgtatcttgaacaatgatacaaccaaattctatattattc 400  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  31558987 taaaaatatatatgtagcttgaacaatgatacaacctacttctatattattc 31558936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 121 - 344
Target Start/End: Original strand, 31877529 - 31877754
Alignment:
Q  121 aaagtctagaga-tatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgta--------ac 211  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||        ||    
T  31877529 aaagtctagagaatatgtgattgtccaagttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagac 31877628  T
Q  212 tgatattgagtaattgacactgccaaaatccagtaatgacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatct 311  Q
    ||||| ||| |||||  ||||||||||||||| |||||| || |||||        |||||||||||||||||||||| |||| ||| ||||||||||||    
T  31877629 tgatactgattaatttgcactgccaaaatccattaatgatggggaaaa-------taaggacaaatataattcaagaatagaatgccaattcaattatct 31877721  T
Q  312 acggagatacaattgacataagttgaaaaatgt 344  Q
    |||||||||||||||||||||| ||||||||||    
T  31877722 acggagatacaattgacataagatgaaaaatgt 31877754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 31877389 - 31877503
Alignment:
Q  5 gagtttttcatacagaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagactgattacatcctccaagcca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  31877389 gagtttttcatacagaagctcttaactgttggaataacaacatatatc----cgtgaattgatcaaattcaccttgagactgattacatcctccaagcca 31877484  T
Q  105 aggtggatgaatccgcaaa 123  Q
    |||||||||||||| ||||    
T  31877485 aggtggatgaatccacaaa 31877503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 9838362 - 9838278
Alignment:
Q  475 tccttgagattgttcttataaaataacatcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctca 559  Q
    ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9838362 tccttgagattgttcgtgtaaagtagcatcatcattgagacagctctttataactggatgcaagtgtgtaagacagtgagcctca 9838278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 31559405 - 31559304
Alignment:
Q  18 agaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagactgattacatcctccaagccaaggtggatgaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||    | |||||||||| ||||||||||  ||||||||||| |||||||||||||||||||    
T  31559405 agaagctcttaactgttggaataacaacatatatcagtga----actgatcaaattaaccttgagaccaattacatcctctaagccaaggtggatgaatc 31559310  T
Q  118 cgcaaa 123  Q
    | ||||    
T  31559309 cacaaa 31559304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 31556173 - 31556020
Alignment:
Q  147 agttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagta 246  Q
    ||||||||||||| |||  |||||| | ||||||||||||| |||||  ||||||||||||||||||||| ||| |||||  ||||||||||||||||||    
T  31556173 agttgtacataggctgataatagatccgcgacagtgaatattgtcttcagttggagggctgtaactgatactgattaatttgcactgccaaaatccagta 31556074  T
Q  247 atgacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaatt 307  Q
    |||| |  | |||||||||     ||||||||||||||||||| |||| ||| ||||||||    
T  31556073 atgatg--ggaaaaataaa-----gacaaatataattcaagaatagaatgccaattcaatt 31556020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 31556000 - 31555903
Alignment:
Q  300 attcaattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattatt 399  Q
    ||||||||||||||  |||||||||||||||||       ||||||| |||||| |||||||||| ||||||||||||| ||||| | ||||||||||||    
T  31556000 attcaattatctacaaagatacaattgacataa-------aatgtgttctaaaa-tatatatgtagcttgaacaatgatccaacctacttctatattatt 31555909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 31852379 - 31852320
Alignment:
Q  189 gtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaat 248  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  31852379 gtcttctgttggagggcaataactgatattgagtaattgacactgcaaaaatccagtaat 31852320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 31556384 - 31556306
Alignment:
Q  36 gaataacaacatatatcagtgagtgaattgatcaaattcaccttgagactgattacatcctccaagccaaggtggatga 114  Q
    |||| ||| ||||||||||| || || ||||||||||| || |||||||  ||||||||||||||||||| ||||||||    
T  31556384 gaattacatcatatatcagtcagcgacttgatcaaattaacattgagaccaattacatcctccaagccaaagtggatga 31556306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 586
Target Start/End: Complemental strand, 31558060 - 31558023
Alignment:
Q  549 agtgagcctcactgcctcagaaagcttttctctagaat 586  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31558060 agtgagcctcactgcctcagaaagcttttctctagaat 31558023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 31559280 - 31559210
Alignment:
Q  119 gcaaagtctagaga-tatgtgattgttcaagttgta----cataggttgaagatagattctcgacagtgaa 184  Q
    |||||||||||||| ||||||||||| |||||||||    |||||||||||||||||| | ||||||||||    
T  31559280 gcaaagtctagagaatatgtgattgtccaagttgtatgtacataggttgaagatagatccgcgacagtgaa 31559210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University