View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19706_low_2 (Length: 538)
Name: NF19706_low_2
Description: NF19706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19706_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Original strand, 38005661 - 38006159
Alignment:
| Q |
19 |
gctcaagcgaaggtgataaaacaactatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatc |
118 |
Q |
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| T |
38005661 |
gctcaagcgaaggtgataaaacaacgatgtttagatcagtcgcaccgtttttatttactactgctttgaattcatgatacacgctagggtgtgacatatc |
38005760 |
T |
|
| Q |
119 |
agggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005761 |
agggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtatagtgctaaaagaacggcttcaaacccggcttgcggttttctatcc |
38005860 |
T |
|
| Q |
219 |
gcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005861 |
gcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaac |
38005960 |
T |
|
| Q |
319 |
gacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005961 |
gacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggt |
38006060 |
T |
|
| Q |
419 |
tgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcagactggattttatctgaggagtttggggtgaaggtgacggctga |
517 |
Q |
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| T |
38006061 |
tgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcaaattggattttatctgaggagtttggggtgaaggtgacggctga |
38006159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 26462152 - 26461657
Alignment:
| Q |
19 |
gctcaagcgaaggtgataaaacaactatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatc |
118 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||| ||| || |
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| T |
26462152 |
gctcaagcgaaggcgataaaacaacgatgtttagatcagttgcactgtttttattgtttactactttggattcatgatacacgctagggtgtgtcatgtc |
26462053 |
T |
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| Q |
119 |
agggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatcc |
218 |
Q |
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||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26462052 |
agggatagtaatggtaacggcttcaccagcgcgtgacgttgtttcatgcgcgtagagagctaaaagaacagcttcaaacccggcttgcggttttctatca |
26461953 |
T |
|
| Q |
219 |
gcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaac |
318 |
Q |
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||||| |||||||| ||||| |||||||| || || |||||||| ||||||||||| ||||||||| || ||| |||||||||||||| |||||||||| |
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| T |
26461952 |
gcgacgcgtgagaggtaaacaccggcgataatcgggaggaaacgtaggacggtgagttggagatcagtgatatttgattggaaagtgtcgtagagccaac |
26461853 |
T |
|
| Q |
319 |
gacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggt |
418 |
Q |
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|||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
26461852 |
gacaaagattgttgtcaccggcgccggagttgggttggcggaggagggtggcgatttggttgtagatttcgggttcgttgaggatagagagaggggtggt |
26461753 |
T |
|
| Q |
419 |
tgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcagactggattttatctgaggagtttggggtgaaggtgacggc |
514 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||| ||| ||||||||||||||||||||| |
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| T |
26461752 |
tgatgaggtaatggagagtgttggattgacgatggtgcaaagggattggagagcggattggattttatctaaggtgtttggggtgaaggtgacggc |
26461657 |
T |
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