View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19706_low_4 (Length: 388)
Name: NF19706_low_4
Description: NF19706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19706_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 9629880 - 9629502
Alignment:
| Q |
1 |
caaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccatgaa |
100 |
Q |
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| T |
9629880 |
caaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaa |
9629781 |
T |
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| Q |
101 |
catggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtg |
200 |
Q |
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| T |
9629780 |
catggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtg |
9629681 |
T |
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| Q |
201 |
tcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtg |
300 |
Q |
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| T |
9629680 |
tcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtg |
9629581 |
T |
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| Q |
301 |
atgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgagtataat |
379 |
Q |
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| T |
9629580 |
atgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgattataat |
9629502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 13607366 - 13607744
Alignment:
| Q |
1 |
caaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccatgaa |
100 |
Q |
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| T |
13607366 |
caaatttaagtgattaagagtaccttcaagtccagtaaatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaa |
13607465 |
T |
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| Q |
101 |
catggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtg |
200 |
Q |
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| T |
13607466 |
catggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtg |
13607565 |
T |
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| Q |
201 |
tcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtg |
300 |
Q |
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| T |
13607566 |
tcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtg |
13607665 |
T |
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| Q |
301 |
atgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgagtataat |
379 |
Q |
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| T |
13607666 |
atgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgattataat |
13607744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 355
Target Start/End: Complemental strand, 13902635 - 13902279
Alignment:
| Q |
5 |
tttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatg |
104 |
Q |
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| T |
13902635 |
tttaagtgattaagagtaccttcaagtccagtaaatgccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatg |
13902536 |
T |
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| Q |
105 |
gtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcag |
204 |
Q |
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| T |
13902535 |
gtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcag |
13902436 |
T |
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| Q |
205 |
tcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgca------tatggttaaggttggacattgtg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13902435 |
ccctgaagtgatttggcatagagctagcaacaaagaaaccaatacagtagcttgaattggaaatgtatgcatatgattatggttaaggttggacattgtt |
13902336 |
T |
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| Q |
299 |
tgatgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaag |
355 |
Q |
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| T |
13902335 |
tggtgattacaaaactcagaaaatgacttcttcaattgctttatttattcaatgaag |
13902279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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