View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19706_low_5 (Length: 335)
Name: NF19706_low_5
Description: NF19706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19706_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 52729871 - 52730183
Alignment:
| Q |
18 |
aatgtatggtgagtcattatcaataaaaatgatttggatatgtaacttgagattgtccgaaatttataaagttaaagagttgaacaatcaattac--cct |
115 |
Q |
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| T |
52729871 |
aatgtatggtgagtcattgtcaataaaaatgatttggatatgtaacttgagattgtccgaaatttatgaagttaaagagttgaacaatcaattacaccct |
52729970 |
T |
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| Q |
116 |
aaatgtatatatcctacaataaaagcgagtctcattaacatggacgcaaggaacaacgttccagatacaattataattaaattagttatcataccaaaga |
215 |
Q |
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| T |
52729971 |
aaatgtatatatcctacaataaaaacgagtctcattaacatggacgtaaggaacaacgttccagatacaattataattaaattagttatcataccaaaga |
52730070 |
T |
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| Q |
216 |
tatacacctcatttaccattcctaaatttaaaactggatttaaagatataaactgttttttcccccatatcaagttaagttattttttcaaatgtgaatt |
315 |
Q |
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| T |
52730071 |
tatacacctcatttaccattcct-aatttaaaactggatttaaagatatcaactgtttttt-ccccatatcaagttaagttattttttcaaatgtgaatt |
52730168 |
T |
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| Q |
316 |
caaactacctatgct |
330 |
Q |
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| T |
52730169 |
caaactacctatgct |
52730183 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 44552240 - 44552167
Alignment:
| Q |
42 |
aaaaatgatttggatatgtaacttgagattgtccgaaatttataaagttaaagagttgaacaatcaattaccct |
115 |
Q |
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|||| ||| |||||||||||||||||||||||| || |||| | |||||| ||||||||||| |||||||||| |
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| T |
44552240 |
aaaagtgacttggatatgtaacttgagattgtctgagatttctttagttaatgagttgaacaaccaattaccct |
44552167 |
T |
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