View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19707_high_14 (Length: 403)
Name: NF19707_high_14
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 43462778 - 43463169
Alignment:
| Q |
1 |
gcaaggtaatactttgtcttattcaattaatgtatgttgaaaactcttcatttttatcaatattttttggtgaccagaatttcgaataagtggagaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43462778 |
gcaaggtaatactttgtcttattcaattaatgtatgttgaaaactcttcatttttattaa-atagtttggtgaccaaaatttcgaataagtggagaattc |
43462876 |
T |
|
| Q |
101 |
agggttcgaactcagctccgcatgtataatacaatgtctctatcaattaaactatacggataaggacatttatcaattaacataaatttgattctttgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43462877 |
agggttcgaactcagctccgcatgtataatacaatgtctctatcaattaaactatacggacaaggacatttatcaattaacataaatttgattctttgta |
43462976 |
T |
|
| Q |
201 |
taggttcttgaacaaggcttgcattatgaagaacagagaaaaagatttagactctaatgggatgccaattgacccatggagtttatgtacagtaagacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43462977 |
taggttcttgaacaaggcttgcattatgaagaacagagaaaaagatttagactctaatgggatgccaattgatccatggagtttatgtacagtaagacaa |
43463076 |
T |
|
| Q |
301 |
gtagaggagttgaaagcagtaatcaaagttcttccgctatggtcgactggcatcacaattgcagttacaataagccaacaatcgttttctgtg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43463077 |
gtagaggagttgaaagcagtaatcaaagttcttccgctatggtcaactggcatcacaattgcagttacaataagccaacaatcgttttctgtg |
43463169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University