View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_high_17 (Length: 372)
Name: NF19707_high_17
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 33969713 - 33969352
Alignment:
| Q |
10 |
aaaatccataatctaactgacttgtgtagggtggttttatttgcaattctgaattgcttttttctaacaccaccatccatatttccctcaaactaattgc |
109 |
Q |
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| T |
33969713 |
aaaatccataatctaactgacatgtgtagggtggttttatttgcaattctgaattgcttttttctaacaccaccttccatatttcactcaaactaattgc |
33969614 |
T |
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| Q |
110 |
ttttcatccaatcaaacaccaaaacctcatcattcaagaaccagaatataaaatacnnnnnnnngaaacagattaacactaaaaccactgttaaaacttc |
209 |
Q |
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| T |
33969613 |
ttttcatccaatcaaacaccagaacctcatcattcaagaaccagaatataaaatacaaaaaaa-gaaacagattaacactaaaaccactgttaaaacttc |
33969515 |
T |
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| Q |
210 |
aactaaaacctaattaccattgcaaattgcaagttgcaacataaattattaacatgcaccacacaaatttaatctccttagttacctttttgatgaaata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33969514 |
aactaaaacctaattaccattgcaaattgcaagttgcaacataaattattaacatgcaccacacaaatttaatctccttagttacctttttgatgaaata |
33969415 |
T |
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| Q |
310 |
agaaacattgtcatcctccaactccggagaaggtggagccacagaagcaacagaagaatcatc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33969414 |
agaaacattgtcatcctccaactccggagaaggtggagccacagaagcaacagaagaatcatc |
33969352 |
T |
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