View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19707_high_20 (Length: 363)
Name: NF19707_high_20
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 17626470 - 17626824
Alignment:
| Q |
1 |
tacatttctttatcctttatagctaatgatatcctaccacnnnnnnnngcacttgatacagaaaagggaagtgtctcaccacgatcatcaatcgactcca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||| || ||||||||||||||| ||||||| | |
|
|
| T |
17626470 |
tacatttctttatcctttatggctaatgatattgtaccacttttttttggacttgatacagaaaagggaagcgtgtcaccacgatcatcagtcgactcga |
17626569 |
T |
|
| Q |
101 |
cacacagtaataaaacctttttcaactttgataactacttataagtttattaagttatgcaattctaaccaaccagttttgttctaggtgattctgtaat |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17626570 |
cacacagtaataaaacctttttcagctttgataactacttatatgtctattcagttatgggactctaaccaaccagttttgttctaggtgattctgtaat |
17626669 |
T |
|
| Q |
201 |
aaactattccacctgatactcaatggacatcaccaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17626670 |
aaactattccacctgatactcaatggacatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacatt |
17626769 |
T |
|
| Q |
301 |
atgaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatgatgtc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17626770 |
atgaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatggtgtc |
17626824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 74 - 355
Target Start/End: Original strand, 17693091 - 17693372
Alignment:
| Q |
74 |
tctcaccacgatcatcaatcgactccacacacagtaataaaacctttttcaactttgataactacttataagtttattaagttatgcaattctaaccaac |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
17693091 |
tctcaccacgatcatcaatcgactccacacacagtaataaaacctttttcaactttgataactacttatatgtttattcagttatgcgattctaaccaac |
17693190 |
T |
|
| Q |
174 |
cagttttgttctaggtgattctgtaataaactattccacctgatactcaatggacatcaccaaagcataggtggttgcaccttatggtgcttgtgatgag |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17693191 |
cagttttgttctaggtgattctgtaataaactattccacctgatactcaatggacatcaccaaaccataggtggttgcaccttatggtgcttgtgatgag |
17693290 |
T |
|
| Q |
274 |
tgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatgatgtc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17693291 |
tgacctaaccttattgtaatgtacattataaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatggtgtc |
17693372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 17613284 - 17613639
Alignment:
| Q |
1 |
tacatttctttatcctttata-gctaatgatatcctaccacnnnnnnnngcacttgatacagaaaagggaagtgtctcaccacgatcatcaatcgactcc |
99 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
17613284 |
tacattcctttatcctttataagctaatgatattctaccacttttttttggacttgatacagaaaagggaagcttgtcaccacgatcatcaatcgactca |
17613383 |
T |
|
| Q |
100 |
acacacagtaataaaacctttttcaactttgataactacttataagtttattaagttatgcaattctaaccaaccagttttgttctaggtgattctgtaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17613384 |
acacacagtaataaaacctttttcaactttgataactacttatatgtgtattcagttatgcgattctaaccaaccagttttgttctaggtgattctgtag |
17613483 |
T |
|
| Q |
200 |
taaactattccacctgatactcaatggacatcaccaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacat |
299 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17613484 |
taaactactccacctgatactcaatgggcatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacat |
17613583 |
T |
|
| Q |
300 |
tatgaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatgatgtc |
355 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
17613584 |
tatgaccttctcgtgttgcaaataggtggagattcaccttcttcgatgatggtgtc |
17613639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 17670866 - 17671220
Alignment:
| Q |
1 |
tacatttctttatcctttatagctaatgatatcctaccacnnnnnnnngcacttgatacagaaaagggaagtgtctcaccacgatcatcaatcgactcca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||| || ||||||||||||||| ||||||| | |
|
|
| T |
17670866 |
tacatttctttatcctttatggctaatgatactgtaccacttttttttggacttgatacagaaaagggaagcgtgtcaccacgatcatcagtcgactcta |
17670965 |
T |
|
| Q |
101 |
cacacagtaataaaacctttttcaactttgataactacttataagtttattaagttatgcaattctaaccaaccagttttgttctaggtgattctgtaat |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || || |||| ||||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
17670966 |
cacacagtaataaaacctttttcagctttgataactacttctatgtctattcagttatgggactcaaaccaaccagttttgttctaggtgattctgtaat |
17671065 |
T |
|
| Q |
201 |
aaactattccacctgatactcaatggacatcaccaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17671066 |
aaactattccacctgatactcaatggacatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacatt |
17671165 |
T |
|
| Q |
301 |
atgaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatgatgtc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17671166 |
atgaccttctcgtgttgcaaatagatggagattcaccttcttcgatgatggtgtc |
17671220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17692938 - 17692977
Alignment:
| Q |
1 |
tacatttctttatcctttatagctaatgatatcctaccac |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17692938 |
tacatttctttatcctttatagctaatgatattctaccac |
17692977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University