View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_high_23 (Length: 350)
Name: NF19707_high_23
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 7161794 - 7161475
Alignment:
| Q |
13 |
aaggtgaccatattgtcttat--cattataatcttaacaacttccagaattttccttctgtaattattatttttgcttttatctcgcagatgctgaaatc |
110 |
Q |
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| T |
7161794 |
aaggtaaccatattgtcttatatcattataatcttaacaacttccagaattttccttctgtaattattattttatcttttctctcgcagatgctgaaatc |
7161695 |
T |
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| Q |
111 |
ctctcaagaatcacaaaaggagaaggttgtaaccccaaatcctctaacgactagggcaacacgtagctccaccaccaaagactatgttttcctttactta |
210 |
Q |
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| T |
7161694 |
ctctcaagaatcacaaaaggagaaggttgtaaccccaaatcctctaacgactagggcaacacgtagctccaccaccaaagactatgttttcctttactta |
7161595 |
T |
|
| Q |
211 |
gtccggtaaaaatcactaannnnnnnagaagtttttggtttgtatgacaaacattttgtatatagaagaggtatgaatgcatctaaataatagtagaagt |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161594 |
gtccggtaaaaatcactaatttttttagaagtttttggtttgtatgacaaacattttgtatatagaagaggtatgaatgcatctaaataatagtagaagt |
7161495 |
T |
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| Q |
311 |
aaattatggttcacgctatt |
330 |
Q |
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|||||||||||||||||||| |
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| T |
7161494 |
aaattatggttcacgctatt |
7161475 |
T |
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