View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_high_28 (Length: 305)
Name: NF19707_high_28
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2552251 - 2551960
Alignment:
| Q |
1 |
caaagcataacataaagaaattaaggacagatcaagaacaagacttaaattgagaagcaccataaacaaaacaggtaaatttaactaggaagcaatttat |
100 |
Q |
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| T |
2552251 |
caaagcataacataaagaaattaaggacagatcaagaacaagacttaaattgagaagcaccataaacaaaacaggtaaatttaactaggaagcaatttat |
2552152 |
T |
|
| Q |
101 |
cattacctgaataatgttcagtgatatggtgagtttcaacatcattaaggttttttagtttctcaccacacttgtgacatatcaaaattgaaggaccatc |
200 |
Q |
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| T |
2552151 |
cattacctgaataatgttcagtgatatggtgagtttcaacatcattaaggtttttcagtttctcaccacacttgtgacatatcaaaattgaaggaccatc |
2552052 |
T |
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| Q |
201 |
atcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattatattcaacaggattggttaaccatgaagatgttgatg |
292 |
Q |
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| T |
2552051 |
atcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattataatcaacaggattggttaaccatgaagatgtagatg |
2551960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 2562935 - 2562760
Alignment:
| Q |
113 |
aatgttcagtgatatggtgagtttcaacatcattaaggttttttagtttctcaccacacttgtgacatatcaaaattgaaggacca---tcatcagaatc |
209 |
Q |
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|||| |||||||||||||| | ||||||| || |||||||||||||||||||||| || |||| ||||||||| |||||||||| | || |||||||| |
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| T |
2562935 |
aatgctcagtgatatggtgtgcttcaacagcagtaaggttttttagtttctcaccgcatttgtaacatatcaatattgaaggacaacagtcctcagaatc |
2562836 |
T |
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| Q |
210 |
catctgaaccaacaaccttgttcgagatgagacattttcttcattata---ttcaacaggattggttaaccatgaa |
282 |
Q |
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| T |
2562835 |
catctcaaccaacaaccttgttctagatgagacattttcctcatcataatcatcaacatgattggttaaccttgaa |
2562760 |
T |
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