View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_high_33 (Length: 250)
Name: NF19707_high_33
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 46706353 - 46706575
Alignment:
| Q |
3 |
tgttattattcatgagacgtgattttttaataaattttatacatgacacaaactatgatcttaaatatgtctgtcaatga-cgttggactcatttggtaa |
101 |
Q |
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| T |
46706353 |
tgttattattcatgagtcgtgattttttaataaattttatacatgacacaaactatgatcttacatatgtctctcaatgaacgttggactcatttggtaa |
46706452 |
T |
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| Q |
102 |
ggagttgatccatcgcaaggtcaaacgttcaacttctgtttctcgtatgtggacttctttggtggatgatatgtaagtacttctattaatactcgccgag |
201 |
Q |
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| T |
46706453 |
ggagttgatccatcgcaaggtcagacgttcaacttctgtttctcgtatgtggacttatttggtggatgatatgtaagtac---------tactcgccgag |
46706543 |
T |
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| Q |
202 |
ttttaaggtctatctaaccataataaacatcg |
233 |
Q |
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| T |
46706544 |
ttttaaggtctatctgaccataataagcatcg |
46706575 |
T |
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