View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_high_43 (Length: 235)
Name: NF19707_high_43
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1490489 - 1490709
Alignment:
| Q |
1 |
taccatgccaaccagaaactttctatttctttttgtgcttggtatcaaattatgctttgtttgatattgactaaatattgtttcttttctactttaattt |
100 |
Q |
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| T |
1490489 |
taccatgccaaccagaaactttctatttctttttgtgcttggtatgaaattatgctttgtttgatattgactaaatattgtttcttttctactttaattt |
1490588 |
T |
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| Q |
101 |
gagtgtttaattaactctatttgatcatcggggagtgttatggctgttttaatgatttttcttagagtttgttattgactaactattggttctttttcta |
200 |
Q |
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| T |
1490589 |
gagtgtttaattaactctatttgatcatcggggagtgatatggctgttttaaagatttttcttagagtttgttattgactaactattggttctttttcta |
1490688 |
T |
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| Q |
201 |
ctttcatttcagtgtttaatt |
221 |
Q |
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| T |
1490689 |
ctttcatttcagtgtttaatt |
1490709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1514533 - 1514710
Alignment:
| Q |
1 |
taccatgccaaccagaaactttctatttctttttgtgcttggtatcaaattatgctttgtttgatattgactaaatattgtttcttttctactttaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514533 |
taccatgccaaccagaaactttctatttctttttgtgcttggtatcaaattatgctttgtttgatattgactaaatattgtttcttttctactttaattt |
1514632 |
T |
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| Q |
101 |
gagtgtttaattaactctatttgatcatcggggagtgttatggctgttttaatgatttttcttagagtttgttattga |
178 |
Q |
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| T |
1514633 |
gagtgtttaattaactctatttgatcatcggggagtgttatggctgttttaaagatttttcttagaatttgttattga |
1514710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 1490655 - 1490720
Alignment:
| Q |
59 |
gtttgatattgactaaatattgtttctttt-ctactttaatttgagtgtttaattaactctatttg |
123 |
Q |
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||||| |||||||||| ||||| ||||||| ||||||| |||| ||||||||||||| ||| |||| |
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| T |
1490655 |
gtttgttattgactaactattggttctttttctactttcatttcagtgtttaattaattctgtttg |
1490720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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