View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_12 (Length: 427)
Name: NF19707_low_12
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 419
Target Start/End: Complemental strand, 16672408 - 16672010
Alignment:
| Q |
21 |
tcagaaatattgagcatctcaggaaagcaagtagatttgatgacttttctgtacatgtatgtcctatgctcttttatttattcgtctctctttgtcttac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16672408 |
tcagaaatattgagcatctcaggaaagcaagtagatttgatgacttttctgtacatgtatgtcctatgctcttttatttattcgtctctctttgtcttac |
16672309 |
T |
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| Q |
121 |
acacatacttctaacctagtattnnnnnnnnn--gtttctctaattgtatttgcaactttataattgagcccgattataaaaaatgtctctctctcnnnn |
218 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16672308 |
acacatacttctaaccttgtattaaaaaaaaaatgtttctctaattgtatttgcaactttataattgagcccgattataaaaaatgtttctctca-aaaa |
16672210 |
T |
|
| Q |
219 |
nnnnnnnnnnntttaccccgattataggtctcttgatcgctaataataattcttgttgaatatataaataaaaggattagtcatattaggcttctactta |
318 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16672209 |
aaaaaaaaaaattgagcccgattataggtctcttgatcgctaataataattcttgttgaatatataaataaaaggattagtcatattaggcttctactta |
16672110 |
T |
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| Q |
319 |
tgtctcatcttactcctcttggttgctgttttgagtagatcactatcgaattaggcttcacttgtggtgttgatcccaataacgtttttgtgtcctatgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
16672109 |
tgtctcatcttactcctcttggttgctgttttgagtagatcactattgaattaggctttggttgt-gtgttgatcccaataacgtttttgtgtcctatgc |
16672011 |
T |
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