View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_13 (Length: 423)
Name: NF19707_low_13
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 50894249 - 50894663
Alignment:
| Q |
1 |
aaatcttttatttaactaaaacaaagataacaacaattt-agggatgtgatttcgaaacaaaattgacctaaacaattctcttagataggtcgaaaagaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50894249 |
aaatcttttatttaactaaaacaaagataacaacaattttagggatgtgatttcgaaacaaaattgacctaaacaattctcttagataggtcgaaaagaa |
50894348 |
T |
|
| Q |
100 |
gtcgaaaatttaaaaagtggtgagtgaaaccaaataatccatcactactttttgtaattnnnnnnngtctaactcatagacaagtatgaaacgtagggtt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50894349 |
gtcgaaaatttaaaaagtggtgagtgaaaccaaataatccatcactattttttgtaattaaaaaaagtctaactcatagacaagtatgaaacgtagggtt |
50894448 |
T |
|
| Q |
200 |
caaatcttcaccctatttatatctaatttgcatgacatataaaacaaatatctaattatgtaaaaaagttccgagatctctctagatgtgggtcaaactg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50894449 |
caaatcttcaccctatttatatctaatttgcatgacatataaaacagatatctaattatgtaaaaaagttccgagatctctctagatgtgggtcaaactg |
50894548 |
T |
|
| Q |
300 |
gtgta-nnnnnnnnnnaagggcaaactggtgtct----tatagtgactaaaatgcacttacgaaagtatcaaaatagccattgtcttttttatttgaaat |
394 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50894549 |
gtgtatttttttttttaagggcaaactggtgtcttatatatagtgactaaaatgcacttacgaaagtatcaaaatagccattatcttttttatttgaaat |
50894648 |
T |
|
| Q |
395 |
gtttaaggaacaaat |
409 |
Q |
| |
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||||||||||||||| |
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| T |
50894649 |
gtttaaggaacaaat |
50894663 |
T |
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