View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_15 (Length: 416)
Name: NF19707_low_15
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Complemental strand, 47391302 - 47390893
Alignment:
| Q |
8 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
107 |
Q |
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| T |
47391302 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
47391203 |
T |
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| Q |
108 |
ttgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgcca |
207 |
Q |
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| T |
47391202 |
ttgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagggaagatattagaggattgagaagtgtcagctcagaataagcagcgcca |
47391103 |
T |
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| Q |
208 |
aaaagaatctgaggttctctcttcaccccttattttatttatatatatatct-ttttgacaatgccacacacaaaccaccaaaaaggaaaagaaaatatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391102 |
aaaagaatctgaggttctctcttcaccccttattttatttatatatatatatcttttgacaatgccacacacaaaccaccaaaaaggaaaagaaaatatg |
47391003 |
T |
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| Q |
307 |
gttttgcctctgtttgcatagaatgagtttattgatcggaattgcatgtttcatgtcagaataaaagtaacatgtttcaaccataatctgtgtgactcat |
406 |
Q |
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| T |
47391002 |
gttttgcctctgtttgcatagaatgagtttattgatcggaattgcatgtttcatgtcagaataaaagtaacatgtttcaaccataatctgtgtgactcat |
47390903 |
T |
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| Q |
407 |
ttttcacatt |
416 |
Q |
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| T |
47390902 |
ttttcacatt |
47390893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 40624828 - 40625229
Alignment:
| Q |
8 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
40624828 |
gagcagagatggaggcctccaaattaagtgcatcagagtcagtgacagcttgcttggaagttgcaaaaaaggagaaaaaatacttgaagaaacttctagc |
40624927 |
T |
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| Q |
108 |
ttgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgcca |
207 |
Q |
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| T |
40624928 |
ttgggaaaa-acagaaagctaagctgcaaaaggagatttctgatttgaaagagaagatattagaggatcgagaagtgtcagctcagaataagcagcgcca |
40625026 |
T |
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| Q |
208 |
aaaagaatctgaggttctctcttcaccccttattttatttatatatatatctttttgacaatgccacacacaaaccaccaaaaaggaaaagaaaatatgg |
307 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
40625027 |
aaaagaagctgaggttctctcttcaccccttattttatttatatatat---ctattgacaatgc--cacacttaccaccacaaaggaaaagaaaatatgg |
40625121 |
T |
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| Q |
308 |
ttttgcctctgtttgcatagaatgagtttattgatcggaattgcatgtttcatgtcagaataaaagtaacatgtttcaaccataatctgtgtgactcatt |
407 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
40625122 |
ttttgcctctgtttgtatagaa-gagtttattgatcggaattgcacgtttcatgtcagaataaaagtaacatgtttcaaccgtaatgtgtgtgactcatt |
40625220 |
T |
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| Q |
408 |
tttcacatt |
416 |
Q |
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|| |||||| |
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| T |
40625221 |
ttgcacatt |
40625229 |
T |
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