View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_17 (Length: 383)
Name: NF19707_low_17
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 44897893 - 44898252
Alignment:
| Q |
11 |
catagggattcaatcaataaggcacaattgaaggattattggaaccaaatttgtgaccacaatttcgaatctaggctcagaacattctttgacatgtaat |
110 |
Q |
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| T |
44897893 |
cataggcattcaatcaataaggcacaattgaaggattgttggaaccaaatttgtgaccacgatttcgaatctaggctcagaacattctttgacatgtaat |
44897992 |
T |
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| Q |
111 |
tatttgctatctttttcttcttgtgggtatataaacaaataaaacagagtattcattgaatgcactgaaatattaatttggaatgcagggttgataagga |
210 |
Q |
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| T |
44897993 |
tatttgctatctttttcttcttgtgggtatataaacaaacaaaacagagtattcattgaatgcactgaaatattaatttggaatgcagggttgataagga |
44898092 |
T |
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| Q |
211 |
tgccgatggcatggtcaatgaggaagaaattgaagagattattagccttagtgccagtgcaaacgacctcttaaacataaagaatcaggccggggaatac |
310 |
Q |
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| T |
44898093 |
tgccgatggcatggtcaatgaggaagaaattgaagagattattagccttagtgccactgcaaacgacctcttaaacataaagaatcaggccggggaatac |
44898192 |
T |
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| Q |
311 |
gctactttgatcatggaagaactgggccgtaatggcgaaaaaactatcagggtaattatt |
370 |
Q |
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| T |
44898193 |
gctgctttgatcatggaagaactgggccgtaatggcgaagaatctatcagggtaattatt |
44898252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 44913339 - 44913431
Alignment:
| Q |
17 |
gattcaatcaataaggcacaattgaaggattattggaaccaaatttgtgaccacaatttcgaatctaggctcagaacattctttgacatgtaa |
109 |
Q |
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| T |
44913339 |
gattcaattaataagccacaattgaaggatttctgggaccagatatctgacaatagttttgattctaggctcagaacattctttgacatgtaa |
44913431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 44913686 - 44913773
Alignment:
| Q |
246 |
agattattagccttagtgccagtgcaaacgacctcttaaacataaagaatcaggccggggaatacgctactttgatcatggaagaact |
333 |
Q |
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| T |
44913686 |
agattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaact |
44913773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 44892837 - 44892879
Alignment:
| Q |
139 |
atataaacaaataaaacagagtattcattgaatgcactgaaat |
181 |
Q |
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| T |
44892837 |
atatacacaaacaaaacagagtattcattgaatgcactgaaat |
44892879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 44883796 - 44883847
Alignment:
| Q |
81 |
ctaggctcagaacattctttgacatgtaattatttgctatctttttcttctt |
132 |
Q |
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| T |
44883796 |
ctaggctcaaaacattctttgacatgtgattatttgctcttttcttcttctt |
44883847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 44883907 - 44883962
Alignment:
| Q |
169 |
aatgcactgaaa---tattaatttggaatgcagggttgataaggatgccgatggca |
221 |
Q |
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| T |
44883907 |
aatgcactgaaagtgtattaatttggaatgcaggattgataaagatgctgatggca |
44883962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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