View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19707_low_2 (Length: 823)

Name: NF19707_low_2
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19707_low_2
NF19707_low_2
[»] scaffold0082 (1 HSPs)
scaffold0082 (487-671)||(28634-28818)
[»] chr7 (12 HSPs)
chr7 (291-487)||(6101423-6101620)
chr7 (22-182)||(6100995-6101157)
chr7 (66-182)||(6234715-6234831)
chr7 (60-182)||(6089152-6089274)
chr7 (66-182)||(6208297-6208413)
chr7 (66-182)||(6237596-6237712)
chr7 (687-748)||(6101646-6101707)
chr7 (81-182)||(6106344-6106445)
chr7 (66-182)||(6180714-6180830)
chr7 (66-182)||(6247535-6247651)
chr7 (81-182)||(6213163-6213264)
chr7 (49-172)||(6094506-6094631)


Alignment Details
Target: scaffold0082 (Bit Score: 177; Significance: 6e-95; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 487 - 671
Target Start/End: Original strand, 28634 - 28818
Alignment:
Q  487 tcttctcttctaacagaagcaactctgtagggaggagagcctgccgatcgagcgaaaggatccatacggctttcagggggagctgcttttacagcctact 586  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28634 tcttctcttcgaacagaagcaactctgtagggaggagagcctgccgatcgagcgaagggatccatacggctttcagggggagctgcttttacagcctact 28733  T
Q  587 ggtatttaagtaacggacgtgtttaattaattttcatgatgattcattcaattcgttcgccgggaagtgcaagctttgcgaacca 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734 ggtatttaagtaacggacgtgtttaattaattttcatgatgattcattcaattcgttcgccgggaagtgcaagctttgcgaacca 28818  T

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Target: chr7 (Bit Score: 130; Significance: 6e-67; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 291 - 487
Target Start/End: Original strand, 6101423 - 6101620
Alignment:
Q  291 ttccccaaccaattcggtcgataaaatgagaggtatatcttccttatgtcgtttcatttgtttgacaatt-acttatgtcataactgtcatcgaggtatt 389  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  6101423 ttccctaaccaattcggtcgataaagtgagagttatatcttccttatgtcatttcatttgtttgacaattcacttatgtcataactgtcattgaggtatt 6101522  T
Q  390 cagaccatccgcggtctctctcaattcttgtagttcttctagccaatcatgaacttttggtttgcgcttttttcgcagcaactgttttataatataat 487  Q
    ||||||||  | ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||  ||||||||||||||||    
T  6101523 cagaccatatgtggtttctctcaattcttgtagttcttctagctaatcataaacttttggtttgcgcttttttccctgcagttgttttataatataat 6101620  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 6100995 - 6101157
Alignment:
Q  22 atagctattgagaggcataatcggtagcatatgatctgatacag--tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgcca 119  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6100995 atagctattgagaggcataatcggtagcatatgatttggtacaaaatccatttgttgacacacgtgtttcaaacgagttgtcagaatgagtttaatgcca 6101094  T
Q  120 ttcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaata 182  Q
    |||  | |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  6101095 ttcgttcttggctgaattccagctttctgaaaatcgatgtacctccaaacatcatccaaaata 6101157  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6234715 - 6234831
Alignment:
Q  66 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 165  Q
    ||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||  |||| || ||||| || ||  |||    
T  6234715 tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttggatgaattcccaccttctgcaaatcaatatatttcc 6234814  T
Q  166 aaacatcatccaaaata 182  Q
    |||||||||||||||||    
T  6234815 aaacatcatccaaaata 6234831  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 6089152 - 6089274
Alignment:
Q  60 atacagtccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgt 159  Q
    ||||| ||||| |||||||||||| |||||||||||||||||| ||| | |||||| |||||||| ||||  ||||||||  ||||||  ||||| ||||    
T  6089152 atacaatccatctgttgacacacaagtttcaaacgagttgtcagaattactttaataccattcacctttgtatgaattcccaccttttccaaatcaatgt 6089251  T
Q  160 acctccaaacatcatccaaaata 182  Q
    |  ||||||||||||||||||||    
T  6089252 atttccaaacatcatccaaaata 6089274  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6208297 - 6208413
Alignment:
Q  66 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 165  Q
    ||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||  |||| || ||||| || ||  |||    
T  6208297 tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcccaccttctgcaaatcaatataattcc 6208396  T
Q  166 aaacatcatccaaaata 182  Q
    |||||||||||||||||    
T  6208397 aaacatcatccaaaata 6208413  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6237596 - 6237712
Alignment:
Q  66 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 165  Q
    ||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||  |||| || ||||| || ||  |||    
T  6237596 tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcccaccttctgcaaatcaatataattcc 6237695  T
Q  166 aaacatcatccaaaata 182  Q
    |||||||||||||||||    
T  6237696 aaacatcatccaaaata 6237712  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 687 - 748
Target Start/End: Original strand, 6101646 - 6101707
Alignment:
Q  687 cacttcttttaagcgtttaatctcactttcagaatcatatacattcaaattgtttggattct 748  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  6101646 cacttcttttaagcgtttaatctcactttcagaatcacttacattcaaattgcttggattct 6101707  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 6106344 - 6106445
Alignment:
Q  81 acatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaa 180  Q
    |||||||||||||| ||||| | ||| | ||||||||||||||||||||| ||||||||  |||| || ||||| || ||  ||||||||||||||||||    
T  6106344 acatgtttcaaacgtgttgttagaatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaa 6106443  T
Q  181 ta 182  Q
    ||    
T  6106444 ta 6106445  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6180714 - 6180830
Alignment:
Q  66 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 165  Q
    ||||| || ||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| ||||||||  |||| |  ||||| || ||  |||    
T  6180714 tccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttcc 6180813  T
Q  166 aaacatcatccaaaata 182  Q
    |||||||||||||||||    
T  6180814 aaacatcatccaaaata 6180830  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6247535 - 6247651
Alignment:
Q  66 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 165  Q
    ||||| || ||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| ||||||||  |||| |  ||||| || ||  |||    
T  6247535 tccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttcc 6247634  T
Q  166 aaacatcatccaaaata 182  Q
    |||||||||||||||||    
T  6247635 aaacatcatccaaaata 6247651  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 6213163 - 6213264
Alignment:
Q  81 acatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaa 180  Q
    ||||||| |||||||||||||||||| | |||||||||||| |||| ||| ||||||||   ||| || ||||| || ||  ||||||||||||||||||    
T  6213163 acatgttccaaacgagttgtcaaaatcactttaatgccatttacttctggatgaattcccaacttctgcaaatcaatatatttccaaacatcatccaaaa 6213262  T
Q  181 ta 182  Q
    ||    
T  6213263 ta 6213264  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 6094506 - 6094631
Alignment:
Q  49 catatgatctg--atacagtccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttt 146  Q
    |||||||||||  ||||| ||||| |  |||||||||||||||||||||||||| | ||| | ||||||  ||||||| ||| |  |||||||  |||||    
T  6094506 catatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgttagaatcactttaattacattcacatttagaggaattcccaccttt 6094605  T
Q  147 tgaaaatcgatgtacctccaaacatc 172  Q
    || ||||| |||||  ||||||||||    
T  6094606 tgcaaatcaatgtatttccaaacatc 6094631  T

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