View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_20 (Length: 365)
Name: NF19707_low_20
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 354
Target Start/End: Original strand, 21114840 - 21115173
Alignment:
| Q |
21 |
agacaccaattgctttcaaggatggtttccaacgtgtggacggtatcttttgtgcaagcaaatggtacaaaagatagatgcgatggggaaatacaaaggt |
120 |
Q |
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| T |
21114840 |
agacgccaattgctttcaaggatggtttccaacgtgtggacggtatcttttgtgcaagcaaatggtacaaaagatagatgcgatggggaaatacaaaggt |
21114939 |
T |
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| Q |
121 |
aaaagcattgatattcaaccattttctcatcgtgctccactaccaggtattaggtatcggtcatttgaagaattcatttattttgaatcaacaaaggtgg |
220 |
Q |
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| T |
21114940 |
aaaagcattgatattcaaccattttctcatcgtgctccactaccaggtagcaggtatcggtcatttgaagaattcatttattttgaatcaacaaaggtgg |
21115039 |
T |
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| Q |
221 |
cttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaacccttgcagcagaagt |
320 |
Q |
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| T |
21115040 |
cttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaacccttgcagcagaagt |
21115139 |
T |
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| Q |
321 |
tggcaagaaggctgaggaattagatatgtttgat |
354 |
Q |
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| T |
21115140 |
tggcaagaaggctgaggaattagatatgtttgat |
21115173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 354
Target Start/End: Original strand, 21122267 - 21122600
Alignment:
| Q |
21 |
agacaccaattgctttcaaggatggtttccaacgtgtggacggtatcttttgtgcaagcaaatggtacaaaagatagatgcgatggggaaatacaaaggt |
120 |
Q |
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| T |
21122267 |
agacaacaattgcttccaaggatggtttccaacgtgtggacgatatcttttgtgcaaacaaatggtgcagaagatagacgcaatggggaggttcaaaggc |
21122366 |
T |
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| Q |
121 |
aaaagcattgatattcaaccattttctcatcgtgctccactaccaggtattaggtatcggtcatttgaagaattcatttattttgaatcaacaaaggtgg |
220 |
Q |
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| T |
21122367 |
aaaagcaaagatatcgaaccattttctcatcttgctccactaccaggtattctgtatcagtcatccgaagacttcatctattttgaatcaacaaaagtgg |
21122466 |
T |
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| Q |
221 |
cttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaacccttgcagcagaagt |
320 |
Q |
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|||| || |||| ||| |||||||| |||||||| ||||||||||||| ||| |||| |||||||||||||| |||||||||||||||| | | ||||| |
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| T |
21122467 |
cttatgataaactcttgaaggcacttgaggatgatcgcatctctataattggactgtacggaatgggtggatgtggaaaaacaacccttgtaacggaagt |
21122566 |
T |
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| Q |
321 |
tggcaagaaggctgaggaattagatatgtttgat |
354 |
Q |
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| T |
21122567 |
tggcaagaaggctgaggaattggatatgtttgat |
21122600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 350
Target Start/End: Original strand, 21703577 - 21703721
Alignment:
| Q |
206 |
aatcaacaaaggtggcttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaac |
305 |
Q |
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| T |
21703577 |
aatctacaaaggtggcatacaatcagctgttggagttactacgtgacgattgcatccatatgataggagtgtatggaatgggtggatgtgggaaaacaac |
21703676 |
T |
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| Q |
306 |
ccttgcagcagaagttggcaagaaggctgaggaattagatatgtt |
350 |
Q |
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| T |
21703677 |
tcttgcaactgaagttggtaagaaggctgaggaatcaaatatgtt |
21703721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 21715938 - 21715794
Alignment:
| Q |
206 |
aatcaacaaaggtggcttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcggaaaaacaac |
305 |
Q |
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|||||||||| | |||||||||||| || |||||| ||| || ||||||||||||| ||| ||||| ||||||||||||||||||| || |||||||| |
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| T |
21715938 |
aatcaacaaaagcggcttacaatcagctcttggagttactaaatgatgattgcatctatatgataggtgtgtatggaatgggtggatgtgggaaaacaac |
21715839 |
T |
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| Q |
306 |
ccttgcagcagaagttggcaagaaggctgaggaattagatatgtt |
350 |
Q |
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| T |
21715838 |
acttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgtt |
21715794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 23010848 - 23010800
Alignment:
| Q |
198 |
ttattttgaatcaacaaaggtggcttacaatcaactattggaggcactt |
246 |
Q |
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| T |
23010848 |
ttattttgaatcaacaaaagtggctagcagtcaactactggaggcactt |
23010800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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