View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_24 (Length: 356)
Name: NF19707_low_24
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 24418992 - 24418679
Alignment:
| Q |
22 |
cttaataatgcttactttatttggggttgtacattggttcatgtaatgtaatagtggtggtttcagagttgttagatagggattaagatatttaagggat |
121 |
Q |
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| T |
24418992 |
cttagtaatgcttactttatttggggctgtacgttggttcatgtaatgtc-tac-ggt--tttcagagttgttagataggcattaagatatttaagggat |
24418897 |
T |
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| Q |
122 |
ggattatactactggccatttaataatatacaagttgattgatgcataactcgcttctttccaacaaatttgtaatttgatattgatggcgttgta-ttt |
220 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
24418896 |
ggattatactacaagccatttaatcatatacaagttgattgatgcataactcgcttcttttcaacaaatttgtaatttgatattgatggagttgtatttt |
24418797 |
T |
|
| Q |
221 |
atcaaagtctattgttga--nnnnnnnctctttatggttaccaaaaaacggcaaaattccctggcttaaagaatttggtcttggatggtatttctaaatt |
318 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24418796 |
atcaaagtctattgttgatttttttttttctttattgttaccaaaaaatggc-aaattccctggcttaaagaatttggtcttggatggtatttctaaatt |
24418698 |
T |
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| Q |
319 |
gtgcttcgtatcaagggtg |
337 |
Q |
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|||| |||||||||||||| |
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| T |
24418697 |
gtgcctcgtatcaagggtg |
24418679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 24415529 - 24415741
Alignment:
| Q |
18 |
aatccttaataatgcttactttatttggggttgtacattggttcatgtaatgtaatagtggtggtttcagagttgttagatagggattaagatatttaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415529 |
aatccttaataatgcttactttatttggggttgtacattggttcatgtaatgtaatagtggtggtttcagagttgttagatagggattaagatatttaag |
24415628 |
T |
|
| Q |
118 |
ggatggattatactactggccatttaataatatacaagttgattgatgcataactcgcttc----------tttccaacaaatttgtaatttgatattga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
24415629 |
ggatggattatactactggccatttaataatatacaagttgattgatgcataactcccttcaaagaagtgagttccaacaaatttgtagtttgatattga |
24415728 |
T |
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| Q |
208 |
tggcgttgtattt |
220 |
Q |
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||| ||| ||||| |
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| T |
24415729 |
tggagttctattt |
24415741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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