View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_27 (Length: 335)
Name: NF19707_low_27
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_27 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 47680986 - 47680673
Alignment:
| Q |
1 |
cttcccaaaaatcgtcttgtgttttagtactttctcaataatttaagatatactcatcataacaatgtccaaaaggcattatgcaagaaatacaagaatg |
100 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680986 |
cttcccaaaaatcgtcttttgttgtagtactttctcaataatttaagctatactcatcataacaatgtccaaaaggcattatgcaagaaatacaagaatg |
47680887 |
T |
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| Q |
101 |
attgcgatcatgtagattcacacaatacctcattcgtttcattttaagtgtcctttgagtacgagttttgttcctatttaaccgtcgttttgatagttta |
200 |
Q |
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| T |
47680886 |
attgctttcatgtagattcacacaatacctcattcgtttctttttaagtgtcctttgagtacgagttttgttcctatttaaccgtcgttttgatagttta |
47680787 |
T |
|
| Q |
201 |
ctgatataattcatcaattatatatatcctttatcaattacttatgcttactcaatttctacttacttgagagtttttgtagggttcgcacaataccttc |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||| |
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| T |
47680786 |
ctgatataattcatcaatt----atatcctttatcaattacttatgcttactcaatttcaaattacttgagagtttctatagggttcgcacaataccttc |
47680691 |
T |
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| Q |
301 |
aattgtttctgtagggtt |
318 |
Q |
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|||||||||||||||||| |
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| T |
47680690 |
aattgtttctgtagggtt |
47680673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 7259822 - 7259788
Alignment:
| Q |
166 |
ttttgttcctatttaaccgtcgttttgatagttta |
200 |
Q |
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| T |
7259822 |
ttttgttcctatttaaccgtcgttttgatatttta |
7259788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 54675310 - 54675258
Alignment:
| Q |
170 |
gttcctatttaaccgtcgttttgatagtttactgatataattcatcaattata |
222 |
Q |
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||||||||||||||||| |||||||| |||| |||| |||| |||||||||| |
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| T |
54675310 |
gttcctatttaaccgtcattttgatattttaaggatacaatttatcaattata |
54675258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 272506 - 272454
Alignment:
| Q |
170 |
gttcctatttaaccgtcgttttgatagtttactgatataattcatcaattata |
222 |
Q |
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| T |
272506 |
gttcctatttaactgtcgttttgatattttaatggtacaatttatcaattata |
272454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 41411590 - 41411538
Alignment:
| Q |
170 |
gttcctatttaaccgtcgttttgatagtttactgatataattcatcaattata |
222 |
Q |
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||||||||||||||||| |||||||| |||| |||| |||| |||||||||| |
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| T |
41411590 |
gttcctatttaaccgtcattttgatattttaaggatacaatttatcaattata |
41411538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 1720033 - 1719950
Alignment:
| Q |
142 |
ttttaagtgtcctttgagtacgagttt--tgttcctatttaaccgtcgttttgatagtttactgatataattcatcaattatat |
223 |
Q |
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| T |
1720033 |
ttttaagtttcgtttgagtacgaatatattgttcctatttaattgttgttttgatagtttatttgtataatttatcaattatat |
1719950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 37269402 - 37269458
Alignment:
| Q |
166 |
ttttgttcctatttaaccgtcgttttgatagtttactgatataattcatcaattata |
222 |
Q |
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||||||||||||||||| |||||||||||| |||| |||| ||| |||||||||| |
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| T |
37269402 |
ttttgttcctatttaactgtcgttttgatattttaaggatacgattgatcaattata |
37269458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 408615 - 408567
Alignment:
| Q |
174 |
ctatttaaccgtcgttttgatagtttactgatataattcatcaattata |
222 |
Q |
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|||||||||||||||||||||| |||| |||| |||| |||||||||| |
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| T |
408615 |
ctatttaaccgtcgttttgatattttatggatacaatttatcaattata |
408567 |
T |
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