View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19707_low_28 (Length: 315)

Name: NF19707_low_28
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19707_low_28
NF19707_low_28
[»] chr3 (6 HSPs)
chr3 (1-299)||(51120808-51121106)
chr3 (41-215)||(51113780-51113954)
chr3 (39-280)||(13470666-13470907)
chr3 (31-280)||(51764374-51764623)
chr3 (127-194)||(27005792-27005859)
chr3 (156-210)||(1657292-1657346)
[»] chr8 (9 HSPs)
chr8 (38-215)||(18315272-18315449)
chr8 (32-212)||(27922425-27922605)
chr8 (107-281)||(34936096-34936270)
chr8 (33-213)||(17636402-17636581)
chr8 (3-232)||(21235446-21235675)
chr8 (107-215)||(32151293-32151401)
chr8 (102-294)||(28246215-28246405)
chr8 (152-193)||(17628035-17628076)
chr8 (157-212)||(17643598-17643653)
[»] chr4 (34 HSPs)
chr4 (24-215)||(546822-547013)
chr4 (3-232)||(570239-570468)
chr4 (107-281)||(553471-553645)
chr4 (107-217)||(1524483-1524593)
chr4 (107-280)||(3438500-3438672)
chr4 (103-214)||(8187091-8187202)
chr4 (103-215)||(1548423-1548535)
chr4 (38-213)||(12121458-12121633)
chr4 (107-214)||(1513407-1513514)
chr4 (110-213)||(8184031-8184134)
chr4 (19-280)||(7225817-7226078)
chr4 (107-218)||(1537763-1537874)
chr4 (38-273)||(55908669-55908904)
chr4 (107-184)||(1508033-1508110)
chr4 (108-212)||(7307853-7307957)
chr4 (19-214)||(1489361-1489556)
chr4 (149-280)||(1600453-1600584)
chr4 (112-233)||(532186-532307)
chr4 (153-213)||(1519143-1519203)
chr4 (121-212)||(1545779-1545870)
chr4 (108-215)||(1552766-1552873)
chr4 (106-280)||(53761706-53761878)
chr4 (18-159)||(558401-558542)
chr4 (43-280)||(640843-641080)
chr4 (142-279)||(659736-659873)
chr4 (149-213)||(12116576-12116640)
chr4 (38-84)||(553402-553448)
chr4 (19-84)||(55505235-55505300)
chr4 (103-187)||(55505135-55505219)
chr4 (26-73)||(644742-644789)
chr4 (103-161)||(12123423-12123481)
chr4 (108-165)||(566182-566239)
chr4 (17-70)||(1545675-1545728)
chr4 (38-70)||(53761913-53761945)
[»] chr6 (27 HSPs)
chr6 (31-235)||(6394780-6394984)
chr6 (32-280)||(6432078-6432326)
chr6 (110-280)||(6402855-6403025)
chr6 (32-280)||(7119074-7119322)
chr6 (31-280)||(6594540-6594789)
chr6 (32-280)||(7131552-7131800)
chr6 (122-294)||(6585157-6585329)
chr6 (123-227)||(12102274-12102378)
chr6 (107-217)||(6409998-6410108)
chr6 (39-236)||(14820617-14820814)
chr6 (102-294)||(11936195-11936387)
chr6 (102-294)||(11948175-11948367)
chr6 (31-212)||(6423133-6423314)
chr6 (39-217)||(14818306-14818484)
chr6 (38-217)||(6415889-6416068)
chr6 (32-186)||(6603230-6603384)
chr6 (107-294)||(7994102-7994289)
chr6 (107-216)||(9411347-9411456)
chr6 (107-187)||(19632431-19632511)
chr6 (40-215)||(6589322-6589497)
chr6 (110-208)||(14802331-14802429)
chr6 (110-189)||(10579761-10579840)
chr6 (149-212)||(28935083-28935146)
chr6 (105-235)||(6426501-6426631)
chr6 (38-75)||(28934972-28935009)
chr6 (42-70)||(7994326-7994354)
chr6 (38-70)||(10579881-10579913)
[»] chr5 (9 HSPs)
chr5 (102-279)||(32267462-32267636)
chr5 (103-280)||(41889488-41889665)
chr5 (32-207)||(41901542-41901717)
chr5 (107-207)||(37937879-37937979)
chr5 (110-208)||(38267562-38267660)
chr5 (107-189)||(20478107-20478189)
chr5 (43-84)||(17205527-17205568)
chr5 (31-73)||(20478223-20478265)
chr5 (104-157)||(12845582-12845635)
[»] chr2 (3 HSPs)
chr2 (17-281)||(45245018-45245282)
chr2 (38-280)||(1037598-1037840)
chr2 (110-213)||(32785773-32785876)
[»] chr7 (3 HSPs)
chr7 (14-280)||(15092085-15092351)
chr7 (152-294)||(7977615-7977757)
chr7 (31-280)||(10614509-10614758)
[»] chr1 (5 HSPs)
chr1 (31-235)||(19468478-19468682)
chr1 (116-212)||(52082582-52082678)
chr1 (42-181)||(7554415-7554554)
chr1 (18-133)||(29719004-29719119)
chr1 (114-212)||(52092776-52092874)
[»] scaffold0295 (1 HSPs)
scaffold0295 (114-235)||(603-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (108-187)||(39177-39256)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 51121106 - 51120808
Alignment:
Q  1 ggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121106 ggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctag 51121007  T
Q  101 agacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121006 agacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaact 51120907  T
Q  201 tcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctttgtta 299  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120906 tcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctttgtta 51120808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 51113954 - 51113780
Alignment:
Q  41 tgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattaca 140  Q
    |||||| |||||||||||||| |||||||| || | ||||||||   ||||  |||  ||  ||| |||||||||||||| ||||||||| ||||| |||    
T  51113954 tgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcaca 51113855  T
Q  141 tatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 215  Q
    || ||| |||||||||||||  ||||||  |||||||  |||||||||| |||| || |||||||||||||||||    
T  51113854 tagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcca 51113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 280
Target Start/End: Complemental strand, 13470907 - 13470666
Alignment:
Q  39 tgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatta 138  Q
    ||||||||||| |||||||||||||||||||| | || ||||||||    |||   ||| ||  | | |||||||||||||| |||| |||||||||| |    
T  13470907 tgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatca 13470808  T
Q  139 catatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaacc 238  Q
     ||| ||| ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||  |||||||||||||| |  | |||||| ||  ||||      
T  13470807 tatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaata 13470708  T
Q  239 ggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  13470707 ggctaagttcaaatgcctaatcttacaacatatccttaaaac 13470666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 51764623 - 51764374
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    |||||||||||||||||||||| ||||||||||||||||| || |   ||||||    |||   ||| ||  | | |||||||||||| | |||| ||||    
T  51764623 ctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctt 51764524  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
    ||||||  |||| ||| ||| |||||||||| |||||   |||||||  ||||||||||  ||  ||||| |||||||||||||| |  | |||||||||    
T  51764523 tgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactctt 51764424  T
Q  231 gaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||  |||  | |||||| || ||||| ||| ||||||||| ||||||    
T  51764423 gaacattcggataggttcaaatgcctaatcttagaacatctccttaaaac 51764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 27005859 - 27005792
Alignment:
Q  127 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttg 194  Q
    |||||||||||||||| ||| ||  || ||||| ||||||||| ||||||||||| ||||||| ||||    
T  27005859 tctttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttg 27005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 1657292 - 1657346
Alignment:
Q  156 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 210  Q
    ||||||||||||   ||||||| ||||||||||| |||| |||||||||||||||    
T  1657292 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 18315449 - 18315272
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatt 137  Q
    |||||||||||||||||||||||  ||  ||||||| | ||||||||   |||||| ||| |   ||| ||||||||||| ||||||||||||||||||     
T  18315449 ttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatc 18315350  T
Q  138 acatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 215  Q
    ||||| |||  ||||||||||||| ||||||| ||||||||||||||||||| |||| |||||| |||||||||||||    
T  18315349 acatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 27922425 - 27922605
Alignment:
Q  32 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactcttt 131  Q
    ||||| ||| |||||||||||||||||||| |||||||| || | ||||| ||    |||  |||| || ||||||| ||||||||||| ||||||||||    
T  27922425 tctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactcttt 27922524  T
Q  132 gagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    ||||| | ||| |||  ||||||||||||  ||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  27922525 gagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 107 - 281
Target Start/End: Complemental strand, 34936270 - 34936096
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    |||||||||||||||||||||||||| |||  |||| ||| ||| |||||||||||||||||  ||||||| ||||||||| | |||  |||| ||||||    
T  34936270 ttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T
Q  207 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 281  Q
     ||||||  ||  | |||||| |||||||| ||| ||||| ||| |||||||||| ||||||||||| |||||||    
T  34936170 atcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaaca 34936096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 17636581 - 17636402
Alignment:
Q  33 ctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttg 132  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |  |||||||  | |||   ||| || |||||||||||||| | | ||||||||||||    
T  17636581 ctcaattgtgtgcaattttctagcacatgcctcactcctttctc-gtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactctttg 17636483  T
Q  133 agattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 213  Q
    |||| ||||| | |  |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||    
T  17636482 agatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 21235446 - 21235675
Alignment:
Q  3 actttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagag 102  Q
    ||||||||||| | | |||| |||||| | |||| |||||||||||||||||||||||| ||||| ||| |||  ||||||||  ||||    || ||      
T  21235446 actttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagta 21235545  T
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 202  Q
    ||| |||||||||||  ||||| |||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||||| |||| |||||||    
T  21235546 acagttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttc 21235645  T
Q  203 aaagttcattccatgcggtttcactcttga 232  Q
    |||||||| ||||  | |||||||| ||||    
T  21235646 aaagttcactccacacagtttcacttttga 21235675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 32151293 - 32151401
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    |||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||  ||||||   |||||||| ||||||||||  |||  |||||| |||    
T  32151293 ttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaag 32151392  T
Q  207 ttcattcca 215  Q
    |||||||||    
T  32151393 ttcattcca 32151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 28246405 - 28246215
Alignment:
Q  102 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 201  Q
    |||| |||||||||||| | |||||||||||||||   ||| |||  || ||  ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  28246405 gacagttgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 28246308  T
Q  202 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 294  Q
    ||||||||| |  |||  | |||| |||||||||||  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  28246307 caaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 28246215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 17628076 - 17628035
Alignment:
Q  152 atcatcaactcttgtatgcgacaagttcaacacctccaattt 193  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  17628076 atcatcaactctagtatgtgacaagttcaacacctccaattt 17628035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 17643653 - 17643598
Alignment:
Q  157 caactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    |||||||||| || |||||||||||| ||||||||||| ||||| ||| |||||||    
T  17643653 caactcttgtttgtgacaagttcaacgcctccaatttgggaactccaacgttcatt 17643598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 546822 - 547013
Alignment:
Q  24 ttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgac 123  Q
    |||||| |||| | || |||||||||||||| ||||||||||||||| || | ||||||||  |||||   ||| ||  |||||| ||||||||||| ||    
T  546822 ttgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaac 546921  T
Q  124 aactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 215  Q
    ||||||||||||| ||||| ||| |||||||||  ||  ||||| | |||||||||| ||||||||||||  ||||||||||||||||||||    
T  546922 aactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattcca 547013  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 570239 - 570468
Alignment:
Q  3 actttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagag 102  Q
    ||||||||||| | | |||| |||||| | |||| |||||||||||||||||||||||| ||||| ||| |||  || |||||  ||||    || ||      
T  570239 actttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagta 570338  T
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 202  Q
    ||| |||||||||||| |||||||||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||| | ||||||||||||    
T  570339 acagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttc 570438  T
Q  203 aaagttcattccatgcggtttcactcttga 232  Q
    |||||||| |||| || |||||||| ||||    
T  570439 aaagttcaatccacgcagtttcacttttga 570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 553471 - 553645
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    |||||||||||||  |||||||||||| || ||||  |||  |||||||||||||||||||   ||||||||||||||||||| ||||||||||| ||||    
T  553471 ttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaag 553570  T
Q  207 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 281  Q
    |||| |  | |    |||||||||||||| | ||| |||||||| |||||||||||||||||| ||| |||||||    
T  553571 ttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaaca 553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 1524593 - 1524483
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    ||||||||||||||||||||||| |||||| | ||| ||| ||||||||||||| |||||| | ||||| |||||||||||||| ||| |||||||||||    
T  1524593 ttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaag 1524494  T
Q  207 ttcattccatg 217  Q
    |||||||||||    
T  1524493 ttcattccatg 1524483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 280
Target Start/End: Complemental strand, 3438672 - 3438500
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    |||||||||||||| ||||||||||||||||||||  ||| ||| |||||||||||||||||| |||||| |||| |||||||||||   ||| ||||||    
T  3438672 ttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaag 3438574  T
Q  207 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||| ||  |   ||||||| | ||||||| |  |||||||| |||||||| ||||||||||||| ||||||    
T  3438573 ttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaac 3438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 8187202 - 8187091
Alignment:
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 202  Q
    |||| ||||||||||||| |||||||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||||||||| ||||  || |||    
T  8187202 acaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttc 8187103  T
Q  203 aaagttcattcc 214  Q
    ||||||||||||    
T  8187102 aaagttcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 1548535 - 1548423
Alignment:
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 202  Q
    |||| ||||||||||||| ||||||||||||||| ||||  ||| ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| |||    
T  1548535 acaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttc 1548436  T
Q  203 aaagttcattcca 215  Q
    |||||||| ||||    
T  1548435 aaagttcagtcca 1548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 12121633 - 12121458
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatt 137  Q
    ||||||||| |||||||||||||| ||||||||  | | ||||||| | || || | ||| || || | ||||||||||||||| |||| ||||||||||    
T  12121633 ttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagatt 12121534  T
Q  138 acatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 213  Q
    ||  | ||| |||||||||||||  ||||||  |||||||||||||| || | |||| ||||||||||||||||||    
T  12121533 acggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 1513514 - 1513407
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    |||||||||||||||||||| |||||||||||| || ||| |||||||||||||  |||||   |||||||||||||| || | |||| |||||||||||    
T  1513514 ttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaag 1513415  T
Q  207 ttcattcc 214  Q
    ||||||||    
T  1513414 ttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 8184134 - 8184031
Alignment:
Q  110 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 209  Q
    ||||||||||| |||||||||||||||| |||| |||  |  |||||||||||||||||| ||||||||||||||||| | |||  ||||||||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttc 8184035  T
Q  210 attc 213  Q
    ||||    
T  8184034 attc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 7226078 - 7225817
Alignment:
Q  19 tcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagccc 118  Q
    |||| |||||| |||||| |||  |||||||||||||||| || |||| ||| || |  ||||| |  ||||| ||||| ||  | | ||||||||| ||    
T  7226078 tcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtcc 7225979  T
Q  119 acgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgc 218  Q
    || |||||||||||| || |||   |||  ||  ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||     |     
T  7225978 acaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgt 7225879  T
Q  219 ggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
     | |||||||||| |||   ||  |||||||| |||||||| ||||||||||||| ||||||    
T  7225878 agcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaac 7225817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 1537874 - 1537763
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||  |||| |||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  1537874 ttgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 1537775  T
Q  207 ttcattccatgc 218  Q
    ||||||||||||    
T  1537774 ttcattccatgc 1537763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 273
Target Start/End: Complemental strand, 55908904 - 55908669
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatt 137  Q
    ||||||||||||||| || ||||||||||| || || | |||||| |    |||  |||| ||| ||| ||| |||||||||| |||| ||||||||||     
T  55908904 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 55908805  T
Q  138 acatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaac 237  Q
    | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||   |||||| |||||| |||| | |  ||||||||||||||||      
T  55908804 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagt 55908705  T
Q  238 cggtcaagttcaagtgtctaatgttacaacatctcc 273  Q
     ||  || ||||| |||||||  |||||||||||||    
T  55908704 aggctaaattcaaatgtctaaccttacaacatctcc 55908669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 1508110 - 1508033
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacac 184  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||||||||||||  | ||||| ||||||||||||||    
T  1508110 ttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 7307853 - 7307957
Alignment:
Q  108 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 207  Q
    |||||||||| || ||||||||||||||| | |  ||||  |||||||||||||  |||||  ||||||||||| |||||||||||| |||||| |||||    
T  7307853 tgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagt 7307952  T
Q  208 tcatt 212  Q
    |||||    
T  7307953 tcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 1489556 - 1489361
Alignment:
Q  19 tcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagccc 118  Q
    |||| |||||| |||| | ||||| ||| ||||||| |||||| |||||||| || | ||||||||  ||||| | ||| ||  | | ||||||||||||    
T  1489556 tcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagccc 1489457  T
Q  119 acgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcc 214  Q
    ||| |||| | ||||||||||| | ||| |||| |  | |||  ||||||  |||||||||||||| || | |||| |||||||||||||||||||    
T  1489456 acggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 1600453 - 1600584
Alignment:
Q  149 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttc 248  Q
    |||||| ||||| |||||||  ||||||||||||||||||| ||| ||||||||||||||||||||  || | |||| | |||||||   ||  ||||||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttc 1600552  T
Q  249 aagtgtctaatgttacaacatctccataaaac 280  Q
    || |||||||| ||| || |||||| ||||||    
T  1600553 aaatgtctaattttagaaaatctccttaaaac 1600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 532186 - 532307
Alignment:
Q  112 aaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcat 211  Q
    ||||| |||||||| |||||||| | ||||| || |||||||||||||   ||||||  ||||||||||||||||| |  ||| | ||||||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcat 532285  T
Q  212 tccatgcggtttcactcttgaa 233  Q
    |||| |  | ||||||||||||    
T  532286 tccaagtagattcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  153 tcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 213  Q
    |||||||| |||||||| ||||||||||||||||| | |||| ||||||||||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 1545779 - 1545870
Alignment:
Q  121 gacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    ||||| ||||||  |||| ||| ||| ||||||||||||||||||||  | |||||||||||||||||| |||  |||||| ||||||||||    
T  1545779 gacaattctttgttattatataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 1552873 - 1552766
Alignment:
Q  108 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 207  Q
    |||||||||||||||||| ||||||| || ||||  ||| ||||||||| ||   ||||||| ||||| |||||||| |||| |||| ||| ||||||||    
T  1552873 tgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagt 1552774  T
Q  208 tcattcca 215  Q
    ||| ||||    
T  1552773 tcagtcca 1552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 280
Target Start/End: Complemental strand, 53761878 - 53761706
Alignment:
Q  106 attgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaa 205  Q
    |||||||||||||||||||| |||| ||||| ||| |  |||||  ||| | |||| | |||   |||||||||||| |||| |  ||| ||||| ||||    
T  53761878 attgcaaaagcccacgacaattcttcgagatcacagagtgtttt--atcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaa 53761781  T
Q  206 gttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    ||||||||||    | ||||||||||||||  |||  |||||||| || ||||||||||||||||||| ||||||    
T  53761780 gttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaac 53761706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 558401 - 558542
Alignment:
Q  18 ctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcc 117  Q
    ||||| |||||  |||||| ||||||||||||||||| |||||| ||||||||||| | ||| ||  | | |||   ||  ||| ||| || ||||||||    
T  558401 ctcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcactcctttatctgtaacgcaaatacaaaattgaagatacagttccaaaagcc 558500  T
Q  118 cacgacaactctttgagattacatatagtttttcatcatcaa 159  Q
    ||||||||||||||||||| ||||  |||  |||||||||||    
T  558501 cacgacaactctttgagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 280
Target Start/End: Original strand, 640843 - 641080
Alignment:
Q  43 tgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacata 142  Q
    ||||||||||||||||||| |||||||| || | ||| |||||   |||   ||| ||  |||  |||||||| ||||| ||| |||||||| | || ||    
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  143 tagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtc 242  Q
     ||| |||||||||||||  ||||||  ||||||||||||||||||||| |  | | |||||| ||||||||| |  | || ||||    ||||||||      
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtaggtttactccatcacaaccggct 641042  T
Q  243 aagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||||| |||||||  ||||||||| ||| ||||||    
T  641043 aagttcaaatgtctaacattacaacatatccttaaaac 641080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 659736 - 659873
Alignment:
Q  142 atagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggt 241  Q
    ||||| |||||| || ||| |||||||| ||||||||||||||||| | |||| |||||||||| || ||| |  |  | ||| |||||||||| | ||     
T  659736 atagtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggc 659835  T
Q  242 caagttcaagtgtctaatgttacaacatctccataaaa 279  Q
     ||||| || | |||||||||||||||||||| |||||    
T  659836 taagtttaaatatctaatgttacaacatctccttaaaa 659873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 12116640 - 12116576
Alignment:
Q  149 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 213  Q
    |||||||||||| |||||||| ||||||||||||||||| || ||  |||| |||||||||||||    
T  12116640 ttcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattc 12116576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 553402 - 553448
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 84  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||    
T  553402 ttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 553448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 55505300 - 55505235
Alignment:
Q  19 tcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 84  Q
    ||||||||||| |||| | ||||||||||||||||| ||| ||||||||||| || | ||||||||    
T  55505300 tcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 55505235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 55505219 - 55505135
Alignment:
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 187  Q
    |||| |||||||| ||||||||| |||||||| | ||||| ||| || |||| |||||  ||||||  |||||||||||||||||    
T  55505219 acaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 55505135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 644742 - 644789
Alignment:
Q  26 gatcactctcaattgtgtgcagttttctaccacatgtttcactccttt 73  Q
    |||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  644742 gatctctctcagttgtgtgcatttttcaaccacatgtttcactccttt 644789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 12123481 - 12123423
Alignment:
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaact 161  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||  |||||| ||||||    
T  12123481 acaattgcaaaagcccacgacaactttttgggattgcataaagtgcttcatcgtcaact 12123423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 566182 - 566239
Alignment:
Q  108 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttg 165  Q
    |||||||||||||||||   ||||||||| ||||| ||| ||||||||||||| ||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttg 566239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 1545675 - 1545728
Alignment:
Q  17 cctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcc 70  Q
    |||||| ||||||||||| | |||||||||||||| |||| ||| |||||||||    
T  1545675 cctcaaattgatcactcttagttgtgtgcagttttttaccgcatctttcactcc 1545728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 53761945 - 53761913
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcc 70  Q
    |||||||||||||||| ||||||||||||||||    
T  53761945 ttgtgtgcagttttcttccacatgtttcactcc 53761913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 6394780 - 6394984
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||    |||  | || ||    |||||||||||||||| |||| ||||    
T  6394780 ctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctt 6394879  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
    |||||| ||| | ||  ||||||||||||| |||||||  |||||||||||||||||||  | | ||||| ||||||||||||||||  |||||||| ||    
T  6394880 tgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcactttt 6394979  T
Q  231 gaaca 235  Q
    |||||    
T  6394980 gaaca 6394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 6432078 - 6432326
Alignment:
Q  32 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactcttt 131  Q
    ||||||||||||||| |||||||||||| |||||||||| || ||||||||||    |||  | |  ||  | | ||||| |||||||| |||| |||||    
T  6432078 tctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattcttt 6432177  T
Q  132 gagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttg 231  Q
     |||| ||||| ||| ||||||||||||| |||||||  |||||||||||||||| ||  ||| ||||||||||||||||||||||  | |||||| ||     
T  6432178 aagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactttta 6432277  T
Q  232 aacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
     ||||  ||  |||||||| ||| |||  ||||||||||||| ||||||    
T  6432278 tacaataggctaagttcaaatgtttaagtttacaacatctccttaaaac 6432326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 280
Target Start/End: Original strand, 6402855 - 6403025
Alignment:
Q  110 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 209  Q
    ||||||||||| |||| |||||||||| ||||| ||| |||||||||||||  | ||||  |||||||||||||| || | || | ||||| |||||||     
T  6402855 caaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagttt 6402954  T
Q  210 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||| |  | |||||||||||||| || || |||||||| || ||||||||||||||||||| ||||||    
T  6402955 attccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaac 6403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 7119074 - 7119322
Alignment:
Q  32 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaac-agctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    |||||||||||||||||||||| |||||||||||||| |||||| |||||||||  ||| | ||||| ||  | | || ||||||||| | |||| ||||    
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttc-agtaatagttccaaaagcccgcaacaattctt 7119172  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
     ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  |||||||||||||| |  | |||||||||    
T  7119173 cgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactctt 7119272  T
Q  231 gaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7119273 gaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7119322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 6594789 - 6594540
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    ||||||||||||||||||||||||||||||||||  |||| |  | ||||| ||    |||  |||||||    | ||| |||||||||| |||| ||||    
T  6594789 ctctcaattgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattctt 6594690  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
    |||||| |||  |||| | |||||||||||   |||||  ||||||| ||||||||||| |||| |||||  |||||| ||||||||  | |||||||||    
T  6594689 tgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactctt 6594590  T
Q  231 gaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    ||||| ||||  |||| ||| ||| |||| ||| ||||||||| ||||||    
T  6594589 gaacacccggataagtacaaatgtgtaatcttataacatctccttaaaac 6594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 7131552 - 7131800
Alignment:
Q  32 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacag-ctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    |||||||||||||||||||||| |||||||||||||| |||| | |||||||||  ||||  ||||| ||  | | || ||||||||| | |||| ||||    
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttc-agtaatagttccaaaagcccgcaacaattctt 7131650  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
     ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  |||||||||||||| |  | |||||||||    
T  7131651 cgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactctt 7131750  T
Q  231 gaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7131751 gaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7131800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 294
Target Start/End: Complemental strand, 6585329 - 6585157
Alignment:
Q  122 acaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggt 221  Q
    ||||||||||||||| ||||| ||| |||||||||||||  ||||||  ||||||||||| |||||||| | |  ||||  |||||| |||||| |  |     
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc 6585230  T
Q  222 ttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 294  Q
    |||||||||||||| || || |||||||| || ||||| ||| ||||||||| |||||||  || ||||||||    
T  6585229 ttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaatacctt 6585157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 12102274 - 12102378
Alignment:
Q  123 caactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtt 222  Q
    ||||||||||| || | ||| |||| ||| | |||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||| |||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtt 12102373  T
Q  223 tcact 227  Q
    |||||    
T  12102374 tcact 12102378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 6409998 - 6410108
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    ||||||||||| || |||| |||||||||| ||||| ||  ||||||||||||| |||||||  ||| |||||||||||| ||  ||| |||||||||||    
T  6409998 ttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaag 6410097  T
Q  207 ttcattccatg 217  Q
    |||||||||||    
T  6410098 ttcattccatg 6410108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 14820617 - 14820814
Alignment:
Q  39 tgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatta 138  Q
    ||||||||||||| ||||||||||||||| || || | ||||||||    |||  |||| ||  | ||| |||||||||||| |||| |||| ||||| |    
T  14820617 tgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatca 14820716  T
Q  139 catatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaa 236  Q
     ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||| ||||| ||||||| ||||||||  ||||||||| |||||||    
T  14820717 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcactcctgaacaa 14820814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 11936387 - 11936195
Alignment:
Q  102 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 201  Q
    |||| |||||||||||||| |||||||||||||||   ||| |||  || ||| ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  11936387 gacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 11936288  T
Q  202 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 294  Q
    ||||||||| |  | |  | |||| ||||||||| |  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  11936287 caaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 11936195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 11948367 - 11948175
Alignment:
Q  102 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 201  Q
    |||| |||||||||||||| |||||||||||||||   ||| |||  || ||| ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  11948367 gacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 11948268  T
Q  202 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 294  Q
    ||||||||| |  | |  | |||| ||||||||| |  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  11948267 caaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 11948175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 6423133 - 6423314
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    ||||||||||||||||||||  ||||||| |||||| |||||| | ||| |||||   |||   ||| ||  | | |||||||| ||||| |||||||||    
T  6423133 ctctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactctt 6423232  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    ||||||  |||| ||| ||| |||   |||||||||||  |||||||||||||||||||  ||| |||||| ||||||||||    
T  6423233 tgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 14818306 - 14818484
Alignment:
Q  39 tgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatta 138  Q
    ||||||||||||||||| ||||||||||| || || | ||||||||    |||  |||| ||  | ||| |||||||||||  |||| |||| ||||| |    
T  14818306 tgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatca 14818405  T
Q  139 catatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatg 217  Q
     ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||||||||| ||||||| ||||||||    
T  14818406 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagttaattccatg 14818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 6415889 - 6416068
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatt 137  Q
    |||||||||||| ||||||||||||||||||||   || ||||||||    |||   ||| ||  | | |||||||||||| | |||| ||||||||||     
T  6415889 ttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 6415988  T
Q  138 acatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatg 217  Q
    ||||| ||  ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||| |||||| |||||||||    
T  6415989 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatg 6416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 6603384 - 6603230
Alignment:
Q  32 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaac-agctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    ||||| |||| ||||||||||||||||||||||||||||||| | |||||||||  ||| |  |||| | | | | || |||||||||| ||||||||||    
T  6603384 tctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaata-atagttccaaaagcccaggacaactctt 6603286  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacct 186  Q
    ||||||  |||| | | ||||||||||||| | |||||  | ||||| ||||||||    
T  6603285 tgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacct 6603230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 294
Target Start/End: Complemental strand, 7994289 - 7994102
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    ||||||||| |||  |||| |||||||||| ||||||||| |||| |||| ||| |||||||  |||| |||||||||||| |  ||  ||||| |||||    
T  7994289 ttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaag 7994190  T
Q  207 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 294  Q
    ||||||||  |  | |||||||||| |||| |||  | |||||| || || || ||||||||| ||| ||||||  ||| ||||||||    
T  7994189 ttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaatacctt 7994102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 9411347 - 9411456
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    ||||||||| ||||||||| ||||||||||  |||| ||| |||||||   ||| | |||||  |||||||||||||||||||  ||| |||| ||||||    
T  9411347 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaag 9411446  T
Q  207 ttcattccat 216  Q
    |||| |||||    
T  9411447 ttcaatccat 9411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 19632431 - 19632511
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 187  Q
    |||||||||||||| |||| |||||||||| ||| | ||||  |||||||||||  |||||| |||||||| |||||||||    
T  19632431 ttgcaaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctc 19632511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 6589497 - 6589322
Alignment:
Q  40 gtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattac 139  Q
    ||||||||||||||||||||||||||||||| |  |  ||||||||   |||   ||  || || ||||||| ||||||   |||| | |||||||| |     
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag 6589398  T
Q  140 atatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 215  Q
    ||||||| ||| ||||| |||  ||||||  |||||||||||||||||||   || ||||| ||||||||||||||    
T  6589397 atatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattcca 6589322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 14802331 - 14802429
Alignment:
Q  110 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 208  Q
    |||||| |||| |||| ||||||| || ||||| ||| |||||||||||||  ||||||  ||||| |||||||| ||||  ||| |||||||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 10579840 - 10579761
Alignment:
Q  110 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 189  Q
    |||||||| || |||| ||||||||||   ||| ||| ||| |||||||||| ||||||  |||||||||||||||||||    
T  10579840 caaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 28935083 - 28935146
Alignment:
Q  149 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    |||||| |||||||||||||| ||||||||||||||||| | || | |||| ||||| ||||||    
T  28935083 ttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 6426501 - 6426631
Alignment:
Q  105 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 204  Q
    |||||||||| || || |||| ||||||||||  |||| |   ||||||||||||  ||||| |  ||||| |||||||||||||  | | ||||| |||    
T  6426501 aattgcaaaatccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaa 6426600  T
Q  205 agttcattccatgcggtttcactcttgaaca 235  Q
    |||||||||||||  |||||||  |||||||    
T  6426601 agttcattccatgtagtttcacgtttgaaca 6426631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 28934972 - 28935009
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactccttttt 75  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28934972 ttgtgtgcaattttctaccacatgcttcactccttttt 28935009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 7994354 - 7994326
Alignment:
Q  42 gtgcagttttctaccacatgtttcactcc 70  Q
    |||||||||||||||||||||||||||||    
T  7994354 gtgcagttttctaccacatgtttcactcc 7994326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 10579913 - 10579881
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcc 70  Q
    ||||||||||||||||||||||||||| |||||    
T  10579913 ttgtgtgcagttttctaccacatgtttaactcc 10579881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 32267462 - 32267636
Alignment:
Q  102 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 201  Q
    ||||||| ||||||||||| ||||||||||||||| | ||| |||  ||||||||||||| |||| || ||||||||||| |||||||||||| ||||||    
T  32267462 gacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaactt 32267561  T
Q  202 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaa 279  Q
    |||||||||||   |   |||||||| |||||||   ||  |||||||| |||||||||||||||||| ||| |||||    
T  32267562 caaagttcatt---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 41889665 - 41889488
Alignment:
Q  103 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 202  Q
    |||||| | ||||||| | |||||||||||||||   ||| ||| |||||||||||||| ||||||  || ||||||||||||||||||||| ||||||     
T  41889665 acaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaacttt 41889566  T
Q  203 aaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    |||||||||| || |  | |||||| ||||||| ||||  |||||||| | |||||||||||||||| ||| ||||||    
T  41889565 aaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaac 41889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 41901717 - 41901542
Alignment:
Q  32 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactcttt 131  Q
    ||||||||| || ||||||||||||||||| |||||||| || | ||||||||    |||   ||  || ||||||| |||||| |||| ||||||||||    
T  41901717 tctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactcttt 41901618  T
Q  132 gagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 207  Q
    ||||| | ||| |||  ||||||||||||| ||||||  ||||||||||||||||||| |||| ||||||||||||    
T  41901617 gagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 37937879 - 37937979
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 206  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| |||||||| ||||||||| | ||||| ||||||||| |  ||| |||||||||||    
T  37937879 ttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaag 37937978  T
Q  207 t 207  Q
    |    
T  37937979 t 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 38267660 - 38267562
Alignment:
Q  110 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 208  Q
    |||||||||||| ||  |||||||||||||||| ||| | |||||||||||||||||||| | ||||| ||||||||| |  ||| |||||||||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 20478189 - 20478107
Alignment:
Q  107 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 189  Q
    |||||||||||||| |||| || ||||||| ||| ||| | |||| ||||||||  ||||||  |||||||||||||||||||    
T  20478189 ttgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 17205527 - 17205568
Alignment:
Q  43 tgcagttttctaccacatgtttcactcctttttgtgtgacat 84  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacat 17205568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 20478265 - 20478223
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactccttt 73  Q
    |||||| |||||||||||||||||| ||||||||| |||||||    
T  20478265 ctctcagttgtgtgcagttttctacgacatgtttcgctccttt 20478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 12845582 - 12845635
Alignment:
Q  104 caattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatc 157  Q
    ||||||||| || |||| |||||||||||||||| ||||||||  |||||||||    
T  12845582 caattgcaatagaccacaacaactctttgagattgcatatagtgcttcatcatc 12845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 45245282 - 45245018
Alignment:
Q  17 cctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagc 116  Q
    |||||| |||||| || | | ||||||||| ||||||||||||||||||||||| || | ||||||||   ||||  |||  |   | | ||||||||||    
T  45245282 cctcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagc 45245183  T
Q  117 ccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccat 216  Q
    |||||||||||||||||||| ||||  ||| |||||||||||||  |||| |  ||||| ||||||||||| | |||  ||||||||||||| ||||||     
T  45245182 ccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccac 45245083  T
Q  217 gcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 281  Q
    |   || || ||||||||| |     ||||| || || ||||||||||||||||||| |||||||    
T  45245082 gtaattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaaca 45245018  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 1037840 - 1037598
Alignment:
Q  38 ttgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagatt 137  Q
    ||||||||||||||| || ||||||||||| || || | |||||| |    |||  |||| ||| ||| ||| |||||||||| |||| ||||||||||     
T  1037840 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 1037741  T
Q  138 acatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaac 237  Q
    | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||   |||||| |||||| |||| | |  |||||||||||||| |      
T  1037740 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaatagt 1037641  T
Q  238 cggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
     ||  || ||||| |||||||  ||||||||||||| ||||||    
T  1037640 aggctaaattcaaatgtctaaccttacaacatctccttaaaac 1037598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 32785876 - 32785773
Alignment:
Q  110 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 209  Q
    |||||||||| || ||||  ||||||| ||||| |||  ||||||||||| ||||||||| ||||||||||||||||| | |||| || ||| |||||||    
T  32785876 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttc 32785777  T
Q  210 attc 213  Q
    ||||    
T  32785776 attc 32785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 15092351 - 15092085
Alignment:
Q  14 atacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaa 113  Q
    ||||| ||| || ||| |||||||||||||||||||||||| |||||||||||||||   || ||||||||   ||||   ||| ||  | | |||||||    
T  15092351 ataccgcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaa 15092252  T
Q  114 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 213  Q
    ||||||| |||| ||||||||||  |||| ||| ||| ||||| |||  |||| |  ||||| |||||||||||||  | | ||||| ||||||||||||    
T  15092251 agcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattc 15092152  T
Q  214 catgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
    ||||  ||||||| ||| |||| || || |||||||| ||| |||  ||| ||||| ||| ||||||    
T  15092151 catgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaac 15092085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 7977615 - 7977757
Alignment:
Q  152 atcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaag 251  Q
    |||||||||| ||||||| |||||||||||  |||| | ||||  ||| || || ||||||||| |  | ||||| |||||||||| ||  | ||| ||     
T  7977615 atcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggctaggtttaaa 7977714  T
Q  252 tgtctaatgttacaacatctccataaaacacaaccaatacctt 294  Q
    |||||||||||||||||||||| ||||||   |||||||||||    
T  7977715 tgtctaatgttacaacatctccttaaaacttgaccaatacctt 7977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 10614509 - 10614758
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    ||||||||||  |||||||||||||||||||||||||||||| || ||||||||    | |   ||| ||  | | |||||||||||||| |||  ||||    
T  10614509 ctctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctt 10614608  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
     ||||| ||||| ||| ||| ||||| |||  | ||||  |||||||||||||||||||  ||| ||||  ||| |||||||||| |  | |||||| ||    
T  10614609 cgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcactttt 10614708  T
Q  231 gaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 280  Q
      ||||  ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  10614709 ttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 10614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 19468682 - 19468478
Alignment:
Q  31 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 130  Q
    |||||| ||||| ||| ||||||  |||||||||||||||||| | ||||||||    ||| |  || | | | |||| |||||| |||| |||  ||||    
T  19468682 ctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttctt 19468583  T
Q  131 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactctt 230  Q
    |||||| ||||| ||| |||||||||||||  ||||||  ||||| |||||||||||||  ||| ||||| ||||||||| |||| |  | |||||||||    
T  19468582 tgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactctt 19468483  T
Q  231 gaaca 235  Q
    |||||    
T  19468482 gaaca 19468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 52082582 - 52082678
Alignment:
Q  116 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 7554415 - 7554554
Alignment:
Q  42 gtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacat 141  Q
    |||||||||||||||||||| |||||||| |||| ||||||||    ||| | ||  ||  ||| ||| ||||| |||| ||||||||||||||| | ||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatat 7554514  T
Q  142 atagtttttcatcatcaactcttgtatgcgacaagttcaa 181  Q
    | |||  |||||||||||| |||||||  || ||||||||    
T  7554515 agagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 29719119 - 29719004
Alignment:
Q  18 ctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcc 117  Q
    ||||| |||||| | |||| |||  |||||||||  ||||||||||||||||| || | |||||||| || ||| ||||| ||  ||||||||||||| |    
T  29719119 ctcaaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggc 29719020  T
Q  118 cacgacaactctttga 133  Q
    ||| ||||||| ||||    
T  29719019 cacaacaactcgttga 29719004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 52092776 - 52092874
Alignment:
Q  114 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 212  Q
    ||||||| | ||||||||||||| ||||| | | | |||||||||| | |||| |  | ||||||||||||||||||||||  ||||| ||||||||||    
T  52092776 agcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcatt 52092874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 724 - 603
Alignment:
Q  114 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 213  Q
    ||||||| |||| |||| ||||| | ||| ||| |||||||||| || |||||||| |||||||| |||||||| ||||   |||||| |||||| ||||    
T  724 agcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattc 625  T
Q  214 catgcggtttcactcttgaaca 235  Q
     | |  ||||||||||||||||    
T  624 taagtagtttcactcttgaaca 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 39177 - 39256
Alignment:
Q  108 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 187  Q
    ||||||||||||| ||||||||||||||| ||||| ||| ||||||||| |||  |||||   | |||||||||||||||    
T  39177 tgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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