View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_40 (Length: 249)
Name: NF19707_low_40
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1490380 - 1490140
Alignment:
| Q |
1 |
atttattttaacaccaaatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcatatacgaaaacaaataaataaaccat |
100 |
Q |
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| T |
1490380 |
atttattttaacacctaatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcatatacgaaaacaaataaataaaccat |
1490281 |
T |
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| Q |
101 |
tagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcatcactccccataccactaaaactgaat |
200 |
Q |
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| T |
1490280 |
tagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcctcactccccataccactaaaactgaat |
1490181 |
T |
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| Q |
201 |
acccttgcactaatcatctctatctaccacttgagtataat |
241 |
Q |
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| T |
1490180 |
agccttgcactaatcatctctatctaccacttgagcataat |
1490140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1514424 - 1514183
Alignment:
| Q |
1 |
atttattttaacacca-aatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcatatacgaaaacaaataaataaacca |
99 |
Q |
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| T |
1514424 |
atttattttaacaccctaatgttgctgatagaaataactagggacatccacttttaaaaacggaaaactcttgcatatacgaaaacaaataaataaacca |
1514325 |
T |
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| Q |
100 |
ttagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcatcactccccataccactaaaactgaa |
199 |
Q |
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| T |
1514324 |
ttagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcctcactccccataccactaaaactgaa |
1514225 |
T |
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| Q |
200 |
tacccttgcactaatcatctctatctaccacttgagtataat |
241 |
Q |
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| T |
1514224 |
tagccttgcactaatcatctctatctaccacttgagcataat |
1514183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 12122302 - 12122109
Alignment:
| Q |
1 |
atttattttaacaccaa-atgttgctgatagaaataactagggacatccacttttaaaaacggaaaact--cttgcatatacgaaaacaaataaataaac |
97 |
Q |
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||||||||||||||| ||||||| ||||||| |||| | |||||||||||| ||||| | ||||| | |||||||||||||||||| | ||||||| |
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| T |
12122302 |
atttattttaacaccctgatgttgccgatagaattaacaacggacatccacttataaaaccagaaaattatcttgcatatacgaaaacaggtcaataaac |
12122203 |
T |
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| Q |
98 |
cattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccacatatctctcaatcatcactccccataccacta |
191 |
Q |
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| T |
12122202 |
ccttagtcttaagtgaaatatataatccttatattatattatgatgcaaaccaaaattccacatatctctctatcctaactccccgtaccacta |
12122109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 1530300 - 1530220
Alignment:
| Q |
129 |
tattatattataatgcaaacccaaattccac---atatctctcaatcatcactccccataccactaaaactgaataccctt |
206 |
Q |
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| T |
1530300 |
tattatattataatgcaaacccaaattcccccccatatctctctatcctcactccccataccagtacaactgaataccctt |
1530220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 557685 - 557754
Alignment:
| Q |
91 |
aataaaccattagtcttaagtggaatatatactccacatattatattataatgcaaacccaaattccaca |
160 |
Q |
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| T |
557685 |
aataaacccttggtctaaagtagaaaatataatccgcatgttatattatgatgaaaacccaaattccaca |
557754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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