View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_44 (Length: 243)
Name: NF19707_low_44
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 47390713 - 47390915
Alignment:
| Q |
23 |
tgacaatagcaaactgtgtcacactagtctaggccatgtcgatgtctgattatgaaacatgtaattttctttgggtgagactggaaataatccgtgtttg |
122 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47390713 |
tgacaatagcaaacagtgtcacactagtctaggccatgtcgatgtctgattatgaaacatgtaattttctttgggtgagactggaaataatccctgtttg |
47390812 |
T |
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| Q |
123 |
ggaattggcttggcccaggacacaaactcccacttgtttcaagccgtaaactacacgtaaagtccaaccaaatggaattcaatgtgaaaaatgagtcaca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390813 |
ggaattggcttggcccaggacacaaactcccacttgtttcaagctgtaaactacacgtaaagtccaaccaaatggaattcaatgtgaaaaatgagtcaca |
47390912 |
T |
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| Q |
223 |
cag |
225 |
Q |
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||| |
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| T |
47390913 |
cag |
47390915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 40625411 - 40625208
Alignment:
| Q |
22 |
gtgacaatagcaaactgtgtcacactagtctaggccatgtcgatgtctgattatgaaacatgtaattttctttgggtgagac--tggaaataatccgtgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| | ||| |
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| T |
40625411 |
gtgacaatagcaaactgtgtcacactagtctaggccatgttgatatctgattttgaaacatgtaattttctttgggtgagactgtggaactaattcctgt |
40625312 |
T |
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| Q |
120 |
ttgggaattggcttggcccaggacacaaactcccacttgtttcaagccgtaaactacacgtaaagtccaaccaaatggaattcaatgtgaaaaatgagtc |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||| |||||||||| |
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| T |
40625311 |
ttgggaattggcttggccaaggacacaaactcccacttgtttcaagccataaactagacgtaaa-ttcaaccaaatggaattcaatgtgcaaaatgagtc |
40625213 |
T |
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| Q |
220 |
acaca |
224 |
Q |
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||||| |
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| T |
40625212 |
acaca |
40625208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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