View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_5 (Length: 659)
Name: NF19707_low_5
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 49 - 641
Target Start/End: Original strand, 44574756 - 44575373
Alignment:
| Q |
49 |
tcttcataaagaaatttgtagagcaaacaagttaaactctcccctctcaatcaaaatttttccatagtcaaagatcaaacttcagatcacttatttaaga |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574756 |
tcttcataaagaaatttgtagagcaaacaagttaaactctcccctctcaatcaaattttttccatagtcaaagatcaaacttcagatcacttatttaaga |
44574855 |
T |
|
| Q |
149 |
agtctaaatttcttaacatttagaccaatctattatatgttcatcatatcttgctttnnnnnnnnn---------ttcgattgattaatatattatgttg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
44574856 |
agtctaaatttcttaacatttagaccaatctattatatgttcatcatatcttgctttaaaaaataaaataaaaaattcgattgattaatatattacgttg |
44574955 |
T |
|
| Q |
240 |
ataggacatcgcatgattctgacctaacctaacccgcaagtctactcagtcactcccttttgcaaccaacgccgtcactcttatcattcaccaatcctcg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44574956 |
ataggacatcgcatgattctgacctaacctaacccgcaagtctactcagtcactcccttttgcaaccaacgccgtcactcttatcattcaccaatcgtcg |
44575055 |
T |
|
| Q |
340 |
tacgtagagaaattctttcaatggctgcagcaacagatttatatttacctgatgagtgttgc----------------tcttgaactgttacggctacag |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
44575056 |
tacgtagagaaattctttcaatggctgcagcaacagatttatatttacctgatgagtgttgggaacacatcttcaaattcttcaactgttacggctacag |
44575155 |
T |
|
| Q |
424 |
cgacaactactacaacagctacttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctcaaactatcactcatgatccgtgac |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575156 |
cgacaactactacaacagctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtctcaaactatcactcatgatccgtgac |
44575255 |
T |
|
| Q |
524 |
accacactccctttcctcggtcaactcttccaaaggttccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataat |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575256 |
accacactccctttcctcggtcaactcttccaaaggttccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataat |
44575355 |
T |
|
| Q |
624 |
tctatttctttgatggat |
641 |
Q |
| |
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|||||||||||||||||| |
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| T |
44575356 |
tctatttctttgatggat |
44575373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 44246646 - 44246591
Alignment:
| Q |
444 |
acttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctc |
499 |
Q |
| |
|
|||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||| |
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| T |
44246646 |
acttgacgtccctctctatcgtctcaaaacagtttctctcaatcactgatcgtctc |
44246591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 17626863 - 17626905
Alignment:
| Q |
358 |
caatggctgcagcaacagatttatatttacctgatgagtgttg |
400 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||||||| |
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|
| T |
17626863 |
caatggttgcagcagcagatttatatttacctaatgagtgttg |
17626905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 548320 - 548270
Alignment:
| Q |
443 |
tacttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaat |
493 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
548320 |
tacttgaagtctctctctgttgtctcaaaacagtttctctccatcaccaat |
548270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 2486366 - 2486318
Alignment:
| Q |
451 |
gtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctc |
499 |
Q |
| |
|
|||||||||| || |||||||||||||||| || |||||||| |||||| |
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| T |
2486366 |
gtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctc |
2486318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 6587906 - 6587947
Alignment:
| Q |
359 |
aatggctgcagcaacagatttatatttacctgatgagtgttg |
400 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
6587906 |
aatggctgcagcaacatatttatatttaccttatgattgttg |
6587947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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