View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_55 (Length: 209)
Name: NF19707_low_55
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 3614127 - 3613949
Alignment:
| Q |
15 |
acctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3614127 |
acctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttg |
3614028 |
T |
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| Q |
115 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3614027 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatc |
3613949 |
T |
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Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 14757950 - 14757772
Alignment:
| Q |
15 |
acctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttg |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||| |||||| |
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| T |
14757950 |
acctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaattctacaaagtgcttctttctgtttaagaatctcattctgcattgtctttg |
14757851 |
T |
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| Q |
115 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||| |||||||||| |||| |
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| T |
14757850 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacgattcataatcggatcgttattacagaatgtgtgatc |
14757772 |
T |
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