View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_6 (Length: 623)
Name: NF19707_low_6
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 5 - 623
Target Start/End: Complemental strand, 51121711 - 51121091
Alignment:
| Q |
5 |
atgtcgaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagtacattacgtcacatgttgtaatcaaaatgtaatcta |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121711 |
atgtagaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagtacattacgtcacatgttgtaatcaaaatgtaatcta |
51121612 |
T |
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| Q |
105 |
aaccat--gcatggaaaagaaaaagcggaaaatgatagaatgagacacaccattgtttggtagatttgatcttacgaaggaaaaatacttaagcagataa |
202 |
Q |
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| T |
51121611 |
aaccataagcatggaaaagaaaaggcggaaaattatagaatgagacacaccattgtttggtagatttgatcttacgtaggaaaaatgcttaagcagataa |
51121512 |
T |
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| Q |
203 |
aagtaacagcagaaaaaagtgtgttacaattaacaagtatatatgcaatactcatgctgccaagtaatatagttcaaggcaaagctatgaaaagctatac |
302 |
Q |
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| T |
51121511 |
aagtaacagcagaaaaaagtgtgttacaattaacaagtatatatgcaatactcatgctgccaagtaatatagttcaaggcaaagctatgaaaagctatac |
51121412 |
T |
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| Q |
303 |
aatgtaaggctgcatatataacacccttgcaatacnnnnnnnttggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaatt |
402 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121411 |
aatgtaaggctgcatatataacacccttgcaatacaaaaaaattggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaatt |
51121312 |
T |
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| Q |
403 |
agagacgtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacttccatgatgac |
502 |
Q |
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| T |
51121311 |
agagacgtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacaaccatgatgac |
51121212 |
T |
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| Q |
503 |
gcaaaaagagttccctctctctatctttgaaatgataagggaaaggatcaaatatctttctcaacgatggccttgaaaagactattgaggtaacaaaatc |
602 |
Q |
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| T |
51121211 |
gcgaaaagagttccctctctctatctttgaaatgataagagaaaggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatc |
51121112 |
T |
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| Q |
603 |
agcatggactttatagcaata |
623 |
Q |
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| T |
51121111 |
agcatggactttatagcaata |
51121091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 45245493 - 45245415
Alignment:
| Q |
409 |
gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaag |
488 |
Q |
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| T |
45245493 |
gtaaattcgaaaacaaaaaacatcttacacttc-aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaag |
45245415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 611
Target Start/End: Original strand, 32267308 - 32267364
Alignment:
| Q |
555 |
tatctttctcaacgatggccttgaaaagactattgaggtaacaaaatcagcatggac |
611 |
Q |
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| T |
32267308 |
tatctttctcaacgacggccttgaagataccatcgaagaaacaaaatcagcatggac |
32267364 |
T |
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