View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19707_low_7 (Length: 587)
Name: NF19707_low_7
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Original strand, 2348037 - 2348597
Alignment:
| Q |
18 |
tttctagctcttagtaggatattacatggattaaggtttccatggtaaatgtttttggagtggagatattcaatgcctctagccatttgaagcatgagat |
117 |
Q |
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| T |
2348037 |
tttctagctcttagtaggatattacatggattaaggtttccatggtaaatgtttttggagtggagatattcaatgcctctagccatttgaagcatgagat |
2348136 |
T |
|
| Q |
118 |
caaccactacaggtatagagaacaaaatctgtctccttggaccacaattctctctcatgtatgtccacaaatccttgttcatcaactccgtcacgagaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348137 |
caaccactacaggtatagagaacaaaatctgtctccttggaccacaattctctctcatgtatgtccacaaatccttgttcatcaactccgtcacgagaga |
2348236 |
T |
|
| Q |
218 |
aaactctttcttctcttcgtcataaaaaccgcatagatattgcaatatgtttgggtgagaaagtgataacaaattggaaatctcattttcataagcttct |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348237 |
aaactctttcttctcttcgtcataaaaaccacatagatattgcaatatgtttgggtgagaaagtgataacaaattggaaatctcattttcataagcttct |
2348336 |
T |
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| Q |
318 |
ctctccccaagaaaatgcctcagagcaaaactttgtcctaaccattgaatttccttaaattccttcccccttcccaatcttctcctcacttggtaatctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348337 |
ctctccccaagaaaatgcctcagagcaaaactttgtcctaaccattgaatttccttaaattccttcccccttcccaatcttctcctcacttggtaatctt |
2348436 |
T |
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| Q |
418 |
tggatcctaacaacacaccaattggccacaatactttatcattactgtttttgtgattagttttatctgaattaccattcatcaatttcttcaacaacat |
517 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348437 |
tggatcctaacaaaacaccaattggccacaatactttatcattactgtttttgtgattagttttatctgaattaccattcatcaatttcttcaacaacat |
2348536 |
T |
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| Q |
518 |
atctgcaaaatgttgatcattctttgaataagtgagtttggaagaaccttttttctctctg |
578 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348537 |
atctgcaaaatgttgatcattctttgaataagtgagtttggaagaaccttttttctctctg |
2348597 |
T |
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