View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19707_low_9 (Length: 491)
Name: NF19707_low_9
Description: NF19707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19707_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 17692967 - 17692727
Alignment:
| Q |
11 |
atcatcagctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatagggatagatatccttaaatatttcaatttca |
110 |
Q |
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| T |
17692967 |
atcattagctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatagggatagatatccttaaatatttcaatttca |
17692868 |
T |
|
| Q |
111 |
cctttagtccttgtaatttgtttttctagtccgtgatactacgtacacagttttgtgtttggtccttgttattttaattttagttcttgttgattaaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17692867 |
cctttagtccttgtaatttgtttttctagtccgtga---ttcgtacacaattttgtgtttggtccttgttattttaattttagttcttgttgattaaagt |
17692771 |
T |
|
| Q |
211 |
cttgtaatatgtagaccttattgatcttagtacctaaattatat |
254 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17692770 |
cttgtaatatgtagaccttattgatcttagtacctaaattatat |
17692727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 154 - 470
Target Start/End: Complemental strand, 17670667 - 17670348
Alignment:
| Q |
154 |
tacacagttttgtgtttggtccttgttattttaattttagttcttgttgattaaagtcttgtaatatgtagaccttattgatcttagtacctaaat---- |
249 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||||| | |
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| T |
17670667 |
tacacaattttgtttttggtccttgttattttaattctagttcatgttggttaaagtcttgtattatgtagaccttattgatcttagcacctaattatat |
17670568 |
T |
|
| Q |
250 |
----tatataaggtctaattccaacattagacaaatatttgaaagattaaaaccaaaaaaggactaaatgctaattttcttatgcttcagagtataaagc |
345 |
Q |
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||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17670567 |
ggagtatataaggacgaattccaacat-agacaaatatttgaaagattaaagccaaaaaaggactaaatgctaattttcttatgcttcagagtataaaac |
17670469 |
T |
|
| Q |
346 |
aaaacaaaaatatacagagactaaaagcaaagactgatataacacaagtgtgaatgaagctgtcaatatattaagcagagtgaacatgcattctagtcta |
445 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||| |
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| T |
17670468 |
aaaacaaaaatat--agagactaaaagcaaagactgatataacacaagtgtgaatgaagatgtta--atattaagcagaatgaacatgcattctagtcta |
17670373 |
T |
|
| Q |
446 |
caaaagtttagcacgatcacgttag |
470 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
17670372 |
ccaaagtttagcacgatcacgttag |
17670348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 273 - 473
Target Start/End: Complemental strand, 17657760 - 17657560
Alignment:
| Q |
273 |
tagacaaatatttgaaagattaaaaccaaaaaaggactaaatgctaattttcttatgcttcagagtataaagcaaaacaaaaatatacagagactaaaag |
372 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17657760 |
tagacaaatatttgaaagattaaagccaaaaaaggactaaatgctaattttcttatgcttcagagtataaagcaaaacaaaaatatacagagactaaaag |
17657661 |
T |
|
| Q |
373 |
caaagactgatataacacaagtgtgaatgaagctgtcaatatattaagcagagtgaacatgcattctagtctacaaaagtttagcacgatcacgttagac |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17657660 |
caaagactgatataacacaagtgtgaatgaagctgtcaatatattaagcagagtgaacatgcattctagtctacaaaagtttagcacgatcacgttagac |
17657561 |
T |
|
| Q |
473 |
c |
473 |
Q |
| |
|
| |
|
|
| T |
17657560 |
c |
17657560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 154 - 470
Target Start/End: Complemental strand, 17626271 - 17625955
Alignment:
| Q |
154 |
tacacagttttgtgtttggtccttgttattttaattttagttcttgttgattaaagtcttgtaatatgtagaccttattgatcttagtacctaa------ |
247 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
17626271 |
tacacaattttgtttttggtccttgttattttaattctagttcatgttggttaaagtcttgtattatgtagaccttattgatcttagcacctaatcatat |
17626172 |
T |
|
| Q |
248 |
--attatataaggtctaattccaacattagacaaatatttgaaagattaaaaccaaaaaaggactaaatgctaattttcttatgcttcagagtataaagc |
345 |
Q |
| |
|
| |||| |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
17626171 |
ggagtatacaaggacgaattccaacat-agacaaatatttgaaagattaaagccaaaaaaggactaaatgctaattttcttatgcttc-gagtataaaac |
17626074 |
T |
|
| Q |
346 |
aaaacaaaaatatacagagactaaaagcaaagactgatataacacaagtgtgaatgaagctgtcaatatattaagcagagtgaacatgcattctagtcta |
445 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||| |
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| T |
17626073 |
aaaacaaaaat----agagactaaaagcaaagactgatataacacaagtgtgaatgaagatgtta--atattaagcagaatgaacatgcattctagtcta |
17625980 |
T |
|
| Q |
446 |
caaaagtttagcacgatcacgttag |
470 |
Q |
| |
|
|||||||||||||||||||| |||| |
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|
| T |
17625979 |
caaaagtttagcacgatcaccttag |
17625955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 344 - 473
Target Start/End: Complemental strand, 17690406 - 17690277
Alignment:
| Q |
344 |
gcaaaacaaaaatatacagagactaaaagcaaagactgatataacacaagtgtgaatgaagctgtcaatatattaagcagagtgaacatgcattctagtc |
443 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17690406 |
gcaaaacaaaaatatactgagactaaaagcaaagattgatataacacaagtgtgaatgaagatgtcaatatattaagcagagtgaacatgcattctagtc |
17690307 |
T |
|
| Q |
444 |
tacaaaagtttagcacgatcacgttagacc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
17690306 |
gacaaaagtttagcacgatcacgttagacc |
17690277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 17613304 - 17613130
Alignment:
| Q |
20 |
tataaaggataaagaaatgtattaactgaaatatca-agaaggtatttaaatatcgtgatagggatagatatccttaaatatttcaatttcacctttagt |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17613304 |
tataaaggataaaggaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaatatttcaaattcacctttagt |
17613205 |
T |
|
| Q |
119 |
ccttgtaatttgtttttctagtccgtgatactacgtacacagttttgtgtttggtccttgttattttaattttagttc |
196 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||| ||| |||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
17613204 |
ccttgtaatttgtttttttagtccctga---tacgtgaacaattttgtttttggtcattgttattttaattctagttc |
17613130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 17626499 - 17626359
Alignment:
| Q |
11 |
atcatcagctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatag--ggatagatatccttaaatatttcaattt |
108 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
17626499 |
atcattagccataaaggataaagaaatgtattaactgaaatatccagaaggtatttaaatatcgtgataggcgcatagatatccttaaatatttcaattt |
17626400 |
T |
|
| Q |
109 |
cacctttagtccttgtaatttgtttttctagtccgtgatac |
149 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
17626399 |
cacctctagtctttgtaatttgtttttctagtccctgatac |
17626359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 17670895 - 17670755
Alignment:
| Q |
11 |
atcatcagctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgataggg--atagatatccttaaatatttcaattt |
108 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17670895 |
atcattagccataaaggataaagaaatgtataaactgaaatatccagaaggtatttaaatatcgtgataggcgcatagatatccttaaatatttcaattt |
17670796 |
T |
|
| Q |
109 |
cacctttagtccttgtaatttgtttttctagtccgtgatac |
149 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
17670795 |
cacctctagtctttgtaatttgtttttctagtccctgatac |
17670755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 395
Target Start/End: Complemental strand, 17613048 - 17612933
Alignment:
| Q |
278 |
aaatatttgaaagattaaaaccaaaa-aaggactaaatgctaattttcttatgcttcagagtataaagcaaaacaaaaatatacagagactaaaagcaaa |
376 |
Q |
| |
|
||||||| |||||||||| | |||| |||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
17613048 |
aaatattccaaagattaaagctaaaacaaggcctaaaagcaaattttctt---cttcagagtctaaagcaaaacaaaaatttacagagacgaaaagcaaa |
17612952 |
T |
|
| Q |
377 |
gactgatataacacaagtg |
395 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
17612951 |
gactggtataacacaagtg |
17612933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 17690453 - 17690405
Alignment:
| Q |
268 |
aacattagacaaatatttgaaagattaaaaccaaaaaaggactaaatgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17690453 |
aacattagacaaatatttgaaagattaaagccaaaaaaggactaaatgc |
17690405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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