View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19708_high_21 (Length: 204)
Name: NF19708_high_21
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 7231856 - 7231690
Alignment:
| Q |
22 |
ttcaacaattataggtgctcttggatgatgagtttccattttgaaaggtttcaaaacaag---gtcagaaatagcaggttcagtagcaagtttggtttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7231856 |
ttcaacaattataggtgctcttggatgatgagtttccattttgaaaggtttcaaaacaagaaggtcaaaaatagcaggttcagtagcaagtttggtttgg |
7231757 |
T |
|
| Q |
119 |
ttacatgataaagaaacttgagctgttttcatagctatgactacatttctggtgattcttaagttct |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7231756 |
ttacatgataaagaaacttgagctgttttcatagctatgactacatttctggtgattcttaagttct |
7231690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 6011733 - 6011568
Alignment:
| Q |
23 |
tcaacaattataggtgctcttggatgatgagtttccattttgaaaggtttcaaaacaagg---tcagaaatagcaggttcagtagcaagtttggtttggt |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | |||||||| |||||||||||| |||||||| ||||| ||||||||||||||||| || |
|
|
| T |
6011733 |
tcaacaattctaggtgctcttggatgatgagtttcaactttgaaagctttcaaaacaagaaaatcagaaattgcaggaccagtagcaagtttggttaagt |
6011634 |
T |
|
| Q |
120 |
tacatgataaagaaacttgagctgttttcatagctatgactacatttctggtgattcttaagttct |
185 |
Q |
| |
|
||| ||||| ||||||||| |||||| |||| ||||||||| || ||||||||||| | ||||||| |
|
|
| T |
6011633 |
tacctgatagagaaacttgggctgttatcatggctatgactgcagttctggtgattttcaagttct |
6011568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University