View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_high_3 (Length: 649)
Name: NF19708_high_3
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 9 - 634
Target Start/End: Original strand, 6232433 - 6233057
Alignment:
| Q |
9 |
agaagaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacat |
108 |
Q |
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| T |
6232433 |
agaagaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacat |
6232532 |
T |
|
| Q |
109 |
cggagataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataa |
208 |
Q |
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| T |
6232533 |
cggagataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctaaaaaatcttttccttcttgtgataa |
6232632 |
T |
|
| Q |
209 |
ttcgtctggaatctttggcaattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccatgcgg---gttctccggtaatcatc |
305 |
Q |
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| T |
6232633 |
ttcctctggaatttttggcaattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccatgcggcgggttctccggtaatcatc |
6232732 |
T |
|
| Q |
306 |
tccacgacggcgcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggtt |
405 |
Q |
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| T |
6232733 |
tccacgacggcgcaaccaagagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacataatcatcggagttcctctcggtt |
6232832 |
T |
|
| Q |
406 |
gccacttttcaccttgttctacacctatctctttcgcaaggccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaa |
505 |
Q |
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| T |
6232833 |
gccacttttcaccttgttctacacctgtctctttcgcaagcccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaa |
6232932 |
T |
|
| Q |
506 |
atcacaatgaacaaacccttttttgtgaatatacttgagtccttcaactaccgacctcgtataattaacggcggacgaggttatccgggagcttaccacc |
605 |
Q |
| |
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| T |
6232933 |
atcacaatgaacaaacccttttttgtgaatatacttgagtccttcaactaccgacctcgta----taacggcggacgaggttatccgggagcttaccacc |
6233028 |
T |
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| Q |
606 |
atgtttctcgagttgatcggagagagttc |
634 |
Q |
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| T |
6233029 |
atgtttctcgagttgatcggagagagttc |
6233057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 57 - 632
Target Start/End: Original strand, 6221699 - 6222279
Alignment:
| Q |
57 |
gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca |
156 |
Q |
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|||||||||||||||| | ||||| || || | ||||||||||||| || | ||||||||| |||||| || ||||| ||||| ||||||||| | |
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| T |
6221699 |
gacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatctttttg |
6221798 |
T |
|
| Q |
157 |
aaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgt |
256 |
Q |
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| T |
6221799 |
aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacggtgattcgtcttctgccccaattcgaattaa |
6221898 |
T |
|
| Q |
257 |
caacattaacatatctga----ct-----cattccatgcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgat |
347 |
Q |
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| T |
6221899 |
caacgaccacatatttgaaccgctgcttacattccatgcatgtttacccgtagccatctccacaatagcgcaaccaagagcccatatatctgccggtgat |
6221998 |
T |
|
| Q |
348 |
tcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgttctacacctatctctttcgcaaggc |
447 |
Q |
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| T |
6221999 |
tcataaacactctcgttcaccgcttctggtgacatatacaatggagttcccctacattccaattttccaccatgttttagacctttctccttagcaaggc |
6222098 |
T |
|
| Q |
448 |
cgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcacaatgaacaaacccttttttgtgaatatacttgagtcc |
547 |
Q |
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| ||||| |||||||||| | | ||||| ||||| |||||||| | | ||||| ||| || |||||||| || |||| |||| || |||||||| |
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| T |
6222099 |
caaaatccgaaatcttaacttcgtcattctcaaatacaagaatgttttgtagcttcacatcgcagtgaacaaaaccattttcatgaacatgtttgagtcc |
6222198 |
T |
|
| Q |
548 |
ttcaactaccgacctcgtataattaacggcggacgaggttatccgggagcttaccaccatgtttctcgagttgatcggagagagt |
632 |
Q |
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| T |
6222199 |
ttgaacgactgatcttgt----gtaacgccgaacgagattctctggtaacttaccaccatgattcttgagttgatcggagagagt |
6222279 |
T |
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