View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_1 (Length: 792)
Name: NF19708_low_1
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 416 - 790
Target Start/End: Original strand, 53123366 - 53123740
Alignment:
| Q |
416 |
ttttgacataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagtttagttccatctgtatttgcctctt |
515 |
Q |
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| T |
53123366 |
ttttgacataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagttcagttccatctgtatttgcctctt |
53123465 |
T |
|
| Q |
516 |
cactggttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgg |
615 |
Q |
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| T |
53123466 |
cactggttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgg |
53123565 |
T |
|
| Q |
616 |
gttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaa |
715 |
Q |
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| T |
53123566 |
gttggattcgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaa |
53123665 |
T |
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| Q |
716 |
ccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaattatctaccca |
790 |
Q |
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| T |
53123666 |
ccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaatgatcttccca |
53123740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 53122967 - 53123318
Alignment:
| Q |
19 |
aggattgcgtgaggattttcttaaaaaggaaaatggctaaaaacgaaaatgcctatgagttcaaactatcatctgacttgtacttacaatacaccatctt |
118 |
Q |
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| T |
53122967 |
aggattgcgtgaggattttcttaaaaaggaaaatggctaaaaacgaaaatgcctatgagttcaatctatcatctgacttgtacttacaatacaccatttt |
53123066 |
T |
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| Q |
119 |
cttaattttgcaaaatacatcatccaactcatctaaacaagaattcataagttcgatagatgtgtcctacaaccgataggtatatcaatctatacatgct |
218 |
Q |
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| T |
53123067 |
cttaattttgcaaaatacatcatccaactcatccaaacaagaattcataagctcgatagatgtgtcctacaaccgataggtatatcaatctatacatgct |
53123166 |
T |
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| Q |
219 |
tttgatgatttgaacaatattcagagggactggaacaaagttacaagcaaaaacttggatttccttcgtcatattgataagaagcatgaatagaaaactc |
318 |
Q |
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| T |
53123167 |
tttgatgatttgagcaatattcagagggactggaacaaaggtacaagcaaaaacttggatttccttcgtcatattgataagaagcatgaatagaaaactc |
53123266 |
T |
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| Q |
319 |
gaaaaaggcaattatagactgagaacttacactgcaattcttggtaactgtg |
370 |
Q |
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| T |
53123267 |
gaaaaaggcaattatagactgagaacttacactgcaattcttggtaactgtg |
53123318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 428 - 476
Target Start/End: Original strand, 6504682 - 6504730
Alignment:
| Q |
428 |
tgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttca |
476 |
Q |
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| T |
6504682 |
tgcaaaatctgaggcacacaagtaaaatgaagatattgaagacctttca |
6504730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 617 - 683
Target Start/End: Original strand, 6505046 - 6505112
Alignment:
| Q |
617 |
ttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttt |
683 |
Q |
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| T |
6505046 |
ttggacttgaaccaagcatatggttttcttttgtcaaagctacttggagtgtctttgaggcaatttt |
6505112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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