View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_10 (Length: 367)
Name: NF19708_low_10
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 46737245 - 46736898
Alignment:
| Q |
1 |
tgaaaatattcttgatcctaatacagtgttgacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgtgaagttagagtgtgt |
100 |
Q |
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| T |
46737245 |
tgaaaatattcttgatcctaatacagtgtagacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgtgaagttagagtgtgt |
46737146 |
T |
|
| Q |
101 |
catgtgtaccgtgaaactaatggtagtgcagatgccttcattaatatggaatgtgatcatgatccatacatggttttctatgagcaacaacatcccctgt |
200 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46737145 |
catgtgtaccgtgaagctaatggttgtgcagatgccttcattaatatggaatgcgatcatgatccatacatggttttctatgagcaacaacatcccctgt |
46737046 |
T |
|
| Q |
201 |
tgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaacaagagatatcaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46737045 |
tgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaacaagagatatcaatg |
46736946 |
T |
|
| Q |
301 |
ctcatgagtcatgaatgcatagacgacacattgagtatcccataaatc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736945 |
ctcatgagtcatgaatgcatagacgacacattgagtatcccataaatc |
46736898 |
T |
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