View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_11 (Length: 362)
Name: NF19708_low_11
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 15807641 - 15807457
Alignment:
| Q |
21 |
aatgcatgtatgcgacatacaaacctcgggaaggtccatgatcactggtttaacaccgacagcatataatggaagaatattataatgctcatactgtccc |
120 |
Q |
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| T |
15807641 |
aatgcatgtatgcgacatacaaacctcaggaaggtccatgatcactggtttaacaccgacagcatataatggaagaatattataatgctcatactgtccc |
15807542 |
T |
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| Q |
121 |
ctcttattctcaacatctgcagcatatcttttcgtctggcataaaaataacattctcagtacatgttcccgccattcttatataa |
205 |
Q |
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| T |
15807541 |
ctcttattctcaacatctgcagcatatcttttcgtctggcataaaaataacattctcagtacatgttcccgccattcttatataa |
15807457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 15807425 - 15807369
Alignment:
| Q |
292 |
aaaaacacaccttttcctcaatagtttgtggagttagcaaagtcttcagtacttcat |
348 |
Q |
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| T |
15807425 |
aaaaacgcaccttctcctcaatagtttgtggagttagcaaagtcttcagtacttcat |
15807369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 1282274 - 1282240
Alignment:
| Q |
204 |
aaggtcaaactcttaccactgagctgacacctcat |
238 |
Q |
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| T |
1282274 |
aaggtcaaactcttactactgagctgacacctcat |
1282240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 45930059 - 45929883
Alignment:
| Q |
9 |
agcagagatgacaatgcatgtatgcgacatacaaacctcgggaaggtccatgatcactggtttaacaccgacagcatataatggaagaatattataatgc |
108 |
Q |
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|||| |||||||||||||||| ||| ||||||||||| |||||| | ||||||| | |||| |||||||| | ||| ||| ||||| |||||||||||| |
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| T |
45930059 |
agcaaagatgacaatgcatgtttgcagcatacaaacctggggaagtttcatgatctccggttcaacaccgataacatgtaacggaaggatattataatgc |
45929960 |
T |
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| Q |
109 |
tcatactgtcccctcttattctcaacatctgcagcatatcttttcgtctgg-cataaaaataacattctcagtacat |
184 |
Q |
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| T |
45929959 |
tcatactgtcctttcttattctcaacatctgcagcatatctttttgtcgggccaaaaaattaacattctcagtacat |
45929883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 41337685 - 41337651
Alignment:
| Q |
201 |
tataaggtcaaactcttaccactgagctgacacct |
235 |
Q |
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| T |
41337685 |
tataaggtcaaactcttaccactgagctgacacct |
41337651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 22825623 - 22825660
Alignment:
| Q |
204 |
aaggtcaaactcttaccactgagctgacacctcataga |
241 |
Q |
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| T |
22825623 |
aaggtcaaactcttaccactgagatgacacctcataga |
22825660 |
T |
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