View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19708_low_12 (Length: 341)

Name: NF19708_low_12
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19708_low_12
NF19708_low_12
[»] chr1 (5 HSPs)
chr1 (1-326)||(31882446-31882784)
chr1 (2-90)||(28214257-28214344)
chr1 (117-225)||(40454690-40454797)
chr1 (54-118)||(22161731-22161795)
chr1 (36-95)||(11420365-11420424)
[»] chr5 (6 HSPs)
chr5 (117-224)||(31291570-31291677)
chr5 (173-224)||(27200623-27200674)
chr5 (67-97)||(36962010-36962040)
chr5 (67-97)||(42765280-42765310)
chr5 (117-230)||(18521636-18521749)
chr5 (173-233)||(14945204-14945264)
[»] chr7 (7 HSPs)
chr7 (141-273)||(9678328-9678460)
chr7 (117-220)||(19017131-19017234)
chr7 (118-266)||(7097524-7097672)
chr7 (19-95)||(664977-665053)
chr7 (118-266)||(29526642-29526790)
chr7 (30-95)||(19017026-19017091)
chr7 (175-232)||(33972932-33972989)
[»] chr4 (2 HSPs)
chr4 (141-273)||(13543272-13543404)
chr4 (67-95)||(25553252-25553280)
[»] chr6 (4 HSPs)
chr6 (159-270)||(6047122-6047233)
chr6 (173-245)||(7090580-7090652)
chr6 (60-95)||(13434356-13434391)
chr6 (67-95)||(7090456-7090484)
[»] chr2 (3 HSPs)
chr2 (148-266)||(7861417-7861535)
chr2 (67-97)||(27072363-27072393)
chr2 (146-199)||(18777157-18777210)
[»] chr3 (3 HSPs)
chr3 (117-200)||(14504223-14504306)
chr3 (58-95)||(13434490-13434527)
chr3 (2-95)||(29704653-29704745)
[»] chr8 (3 HSPs)
chr8 (13-95)||(2491377-2491459)
chr8 (173-245)||(12246922-12246994)
chr8 (2-90)||(39533709-39533796)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 31882784 - 31882446
Alignment:
Q  1 cacggaagctaggttaaggatgtggatgtcttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagtttgttaagtgag 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||    
T  31882784 cacggaagctaggttaaggatgtggatgccttagttaattcatggacaattttattcacttgtctactgataaattcaacatgagagtttgttaagtgag 31882685  T
Q  101 aacaacaaaattggataccaaattcggtgatatctccatctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgag 200  Q
    ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31882684 aactacaaaattggatatcaaattcggtgatatctccctctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgag 31882585  T
Q  201 cggtagatcatgtatccactgaatcgtatgatagagtcccaaagcctcccctata--------tcaactggacataatgg-----aacacattgttttgg 287  Q
      |||| |||||||| |||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||     | ||||||||||||     
T  31882584 ttgtaggtcatgtattcactgaatcgcatgatagagtcccaaagcctcccctatatcaagttatcaactggacataatggagtgaaccacattgttttga 31882485  T
Q  288 agagaacatgatggccttctgcgtctctgatgcaaatgt 326  Q
    |||||||||||||||||| ||||||||  ||||||||||    
T  31882484 agagaacatgatggccttttgcgtctcatatgcaaatgt 31882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 28214257 - 28214344
Alignment:
Q  2 acggaagctaggttaaggatgtggatgtcttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagttt 90  Q
    ||||||||||| | ||||| ||||||| ||| | |||||||||| ||| |  |||||||||||| ||||||||||||||||||||||||    
T  28214257 acggaagctag-tcaaggaagtggatgcctttgctaattcatgggcaaccgcattcacttgtctcctaataaactcaacatgagagttt 28214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 40454690 - 40454797
Alignment:
Q  117 accaaattcggtgatatctccatctcctctattaaaatag-tcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtat 215  Q
    |||||||||||||| |||| |  ||||||||||||| ||  ||||||| | ||| | ||||||||||||||||||||||  ||||  |||| |||| |||    
T  40454690 accaaattcggtgacatctacccctcctctattaaagtaaatcagctactattttcgaatcaacctcaaaatcaacatt--tgagttgtaggtcatatat 40454787  T
Q  216 ccactgaatc 225  Q
    ||||||||||    
T  40454788 ccactgaatc 40454797  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 22161795 - 22161731
Alignment:
Q  54 attcacttgtctgctaataaactcaacatgagagtttgttaagtgagaacaacaaaattggatac 118  Q
    |||| |||| || ||||||||||| ||||||||||||||||||| || |  ||||||||||||||    
T  22161795 attcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtattacaaaattggatac 22161731  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 11420365 - 11420424
Alignment:
Q  36 taattcatggacaatcttattcacttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    ||||||||| |||| || ||| ||||| || ||||||||||| |||||||||||||||||    
T  11420365 taattcatgaacaacctcatttacttgcctcctaataaactcgacatgagagtttgttaa 11420424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 31291677 - 31291570
Alignment:
Q  117 accaaattcggtgatatctccatctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatc 216  Q
    |||||| ||||||||||||||    |||||||||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||||| | || |||||||||    
T  31291677 accaaactcggtgatatctcccctacctctattaaaataatcaactacttttttcaattcaacctcaaaatcaacatttgtgagctgaagttcatgtatc 31291578  T
Q  217 cactgaat 224  Q
    ||||||||    
T  31291577 cactgaat 31291570  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 27200623 - 27200674
Alignment:
Q  173 aatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaat 224  Q
    |||||| |||||||||||||||||| ||| ||| |||||| |||||||||||    
T  27200623 aatcaatctcaaaatcaacatttgttagccgtaaatcatgaatccactgaat 27200674  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 36962010 - 36962040
Alignment:
Q  67 ctaataaactcaacatgagagtttgttaagt 97  Q
    |||||||||||||||||||||||||||||||    
T  36962010 ctaataaactcaacatgagagtttgttaagt 36962040  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 42765310 - 42765280
Alignment:
Q  67 ctaataaactcaacatgagagtttgttaagt 97  Q
    |||||||||||||||||||||||||||||||    
T  42765310 ctaataaactcaacatgagagtttgttaagt 42765280  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 18521749 - 18521636
Alignment:
Q  117 accaaattcggtgatatctccatctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatc 216  Q
    ||||||||| |||||||||||    ||| | || ||||| | ||||| ||||| | ||||||||||||| ||||||||||||||| | ||  |||||| |    
T  18521749 accaaattcagtgatatctcctcaacctttgttgaaataattagctacttttttctaatcaacctcaaagtcaacatttgtgagctgaagtccatgtacc 18521650  T
Q  217 cactgaatcgtatg 230  Q
    ||| |||| |||||    
T  18521649 caccgaattgtatg 18521636  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 14945204 - 14945264
Alignment:
Q  173 aatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgata 233  Q
    ||||||| ||||||||||||||||  ||  ||| |||||||||||||||||| | ||||||    
T  14945204 aatcaacttcaaaatcaacatttggtagtcgtaaatcatgtatccactgaatagcatgata 14945264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 9678328 - 9678460
Alignment:
Q  141 tcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgatagagtccc 240  Q
    ||||||||||||||| ||| |||  ||||   | ||||| ||||||||||| ||| ||| | |||  | |||||||||| ||||| || ||||||||||     
T  9678328 tcctctattaaaataatcaactacattttttgagtcaacgtcaaaatcaacgtttatgaactgtaagtgatgtatccaccgaatcataagatagagtcct 9678427  T
Q  241 aaagcctcccctatatcaactggacataatgga 273  Q
    ||||||||||||||||||| || ||||||||||    
T  9678428 aaagcctcccctatatcaattgaacataatgga 9678460  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 19017131 - 19017234
Alignment:
Q  117 accaaattcggtgatatctccatctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatc 216  Q
    |||||| |||||||||||||| |   ||||||||||||| ||||||| ||||| | | ||||||||||||||||||| |||| |  | || |||||||||    
T  19017131 accaaactcggtgatatctcccttctctctattaaaataatcagctacttttttcgagtcaacctcaaaatcaacatctgtgggttgaagttcatgtatc 19017230  T
Q  217 cact 220  Q
    ||||    
T  19017231 cact 19017234  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 7097524 - 7097672
Alignment:
Q  118 ccaaattcggtgatatctccatct-cctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatc 216  Q
    |||||||||||| ||||||| ||| ||| | ||||||||  |||||| | ||| | |||| |||||||||||||||||||||||| | || ||||  |||    
T  7097524 ccaaattcggtgctatctcc-tctgcctttgttaaaataaccagctactgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatc 7097622  T
Q  217 cactgaatcgtatgatagagtcccaaagcctcccctatatcaactggaca 266  Q
    ||| |||| | |||||| |||| |||||| || || || |||||||||||    
T  7097623 caccgaattgcatgataaagtctcaaagcttctccaatgtcaactggaca 7097672  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 664977 - 665053
Alignment:
Q  19 gatgtggatgtcttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    ||||||| |||||||| |||||||||  ||| || |||  ||||||| ||||||||||| |||||||||||||||||    
T  664977 gatgtggttgtcttagctaattcatgtgcaacctcatttgcttgtctcctaataaactcgacatgagagtttgttaa 665053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 29526790 - 29526642
Alignment:
Q  118 ccaaattcggtgatatctccatctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatcc 217  Q
    |||||||||||| |||||||   | || | || ||||| ||||||||| ||| | |||| |||||||||||||||||||||||| | || ||||  ||||    
T  29526790 ccaaattcggtgttatctcctcttgctttgttgaaataatcagctattgttttcgaatctacctcaaaatcaacatttgtgagctgaagttcattgatcc 29526691  T
Q  218 actgaatcgtatgatagagtcccaaagcctcccctatatcaactggaca 266  Q
    || || | | |||||| ||||| ||||| || || || | |||||||||    
T  29526690 accgagttgcatgataaagtcctaaagcttctccaatgttaactggaca 29526642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 19017026 - 19017091
Alignment:
Q  30 cttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    |||||||||||||||| ||| |  |||  |||| || ||||||||||||||| |||||||||||||    
T  19017026 cttagttaattcatgggcaaccacatttgcttgcctcctaataaactcaacacgagagtttgttaa 19017091  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 33972989 - 33972932
Alignment:
Q  175 tcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgat 232  Q
    |||||||| ||||||||||||| |||  | || ||||||||||||||||||| |||||    
T  33972989 tcaacctcgaaatcaacatttgagagttgaagttcatgtatccactgaatcgcatgat 33972932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 13543272 - 13543404
Alignment:
Q  141 tcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgatagagtccc 240  Q
    ||||||||||||||| ||| |||  ||||   | ||||| ||||||||||| ||| ||| | |||  | |||||||||| ||||| || ||||||||||     
T  13543272 tcctctattaaaataatcaactacattttttgagtcaacgtcaaaatcaacgtttatgaactgtaagtgatgtatccaccgaatcataagatagagtcct 13543371  T
Q  241 aaagcctcccctatatcaactggacataatgga 273  Q
    ||||||||||||||||||| || ||||||||||    
T  13543372 aaagcctcccctatatcaattgaacataatgga 13543404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 25553280 - 25553252
Alignment:
Q  67 ctaataaactcaacatgagagtttgttaa 95  Q
    |||||||||||||||||||||||||||||    
T  25553280 ctaataaactcaacatgagagtttgttaa 25553252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 6047233 - 6047122
Alignment:
Q  159 agctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgatagagtcccaaagcctcccctatatca 258  Q
    ||||||||||| | | ||||||| ||||||||||||||| ||| | |    || |||||||||||||| ||| |||||||||||  ||||||||||||||    
T  6047233 agctatttttttcgagtcaaccttaaaatcaacatttgtaagctgcaatgtatatatccactgaatcgcatggtagagtcccaagacctcccctatatca 6047134  T
Q  259 actggacataat 270  Q
    |||| |||||||    
T  6047133 actgaacataat 6047122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 7090580 - 7090652
Alignment:
Q  173 aatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgatagagtcccaaagc 245  Q
    ||||||||||||||||||||||||||||| | || ||||| ||||||  ||| ||||| || | |||||||||    
T  7090580 aatcaacctcaaaatcaacatttgtgagccgaagttcatgaatccaccaaattgtatggtaaattcccaaagc 7090652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 13434391 - 13434356
Alignment:
Q  60 ttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    |||||| |||||||||||||||||||||||||||||    
T  13434391 ttgtctcctaataaactcaacatgagagtttgttaa 13434356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 7090456 - 7090484
Alignment:
Q  67 ctaataaactcaacatgagagtttgttaa 95  Q
    |||||||||||||||||||||||||||||    
T  7090456 ctaataaactcaacatgagagtttgttaa 7090484  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 7861535 - 7861417
Alignment:
Q  148 ttaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgatagagtcccaaagcct 247  Q
    |||||||| ||||||||| ||| |||||| |||||||||||||||||||||||| | || ||||  |||||| || | | |||||| ||||| ||||| |    
T  7861535 ttaaaataatcagctattgttttcaaatctacctcaaaatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagctt 7861436  T
Q  248 cccctatatcaactggaca 266  Q
    | || || | |||||||||    
T  7861435 ctccaatgttaactggaca 7861417  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 27072393 - 27072363
Alignment:
Q  67 ctaataaactcaacatgagagtttgttaagt 97  Q
    |||||||||||||||||||||||||||||||    
T  27072393 ctaataaactcaacatgagagtttgttaagt 27072363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 18777210 - 18777157
Alignment:
Q  146 tattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtga 199  Q
    |||| ||||| ||||||| ||||| | |||||||||| ||||||||||||||||    
T  18777210 tattgaaataatcagctacttttttcgaatcaacctcgaaatcaacatttgtga 18777157  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 14504223 - 14504306
Alignment:
Q  117 accaaattcggtgatatctccatctcctctattaaaatagtcagctattttttacaaatcaacctcaaaatcaacatttgtgag 200  Q
    |||||||||||||| ||||||||  ||| | || ||||| ||||||||| |||  || |||||||| |||||||||||||||||    
T  14504223 accaaattcggtgacatctccatgacctttgttgaaataatcagctattcttttaaagtcaacctcgaaatcaacatttgtgag 14504306  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 13434490 - 13434527
Alignment:
Q  58 acttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  13434490 acttgtctcctaataaacttaacatgagagtttgttaa 13434527  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 29704745 - 29704653
Alignment:
Q  2 acggaagctaggttaaggatgtggatgtcttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    ||||||||||| | ||||| ||||||| ||| | |||||||||| ||| |  |||| |||| || |||||||| ||||||||||||||| ||||    
T  29704745 acggaagctag-tcaaggaagtggatgcctttgctaattcatgggcaaccacattcgcttgcctcctaataaattcaacatgagagttttttaa 29704653  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 2491377 - 2491459
Alignment:
Q  13 gttaaggatgtggatgtcttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagtttgttaa 95  Q
    |||||| |||||  |||||| |||||||| | ||| | |||||||| |||||| ||||||||||||| || ||||||| ||||    
T  2491377 gttaagaatgtgactgtctttgttaattcctagacgaccttattcatttgtcttctaataaactcaatataagagtttcttaa 2491459  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 12246994 - 12246922
Alignment:
Q  173 aatcaacctcaaaatcaacatttgtgagcggtagatcatgtatccactgaatcgtatgatagagtcccaaagc 245  Q
    |||||| |||||||||||||||||||||| | || ||||| |||||| |||| | ||| || |||| ||||||    
T  12246994 aatcaatctcaaaatcaacatttgtgagctgaagttcatgaatccaccgaattgcatggtaaagtctcaaagc 12246922  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 39533796 - 39533709
Alignment:
Q  2 acggaagctaggttaaggatgtggatgtcttagttaattcatggacaatcttattcacttgtctgctaataaactcaacatgagagttt 90  Q
    ||||||||||| | ||||| ||||||| ||| | |||||| ||| ||| |  |||| |||| || ||||||||||||||||||||||||    
T  39533796 acggaagctag-tcaaggaagtggatgcctttgctaattcgtgggcaaccacattcgcttgcctcctaataaactcaacatgagagttt 39533709  T

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